Gene annotation
Transcriptome id Sobic.001G376700.1
Synonym PHR2, Sb01g035750
Functional annotation blue-light photoreceptor PHR2, putative, expressed
UniProt C5X0P3
Pfam PF03441 PF00875
Panther DB PTHR11455 PTHR11455:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47590 : photolyase/blue-light receptor 2
RAP-DB (Rice) LOC_Os03g22330.1 : blue-light photoreceptor PHR2, putative, expressed
MaizeGDB (Corn) Zm00025a052403 , Zm00025a002397
Brachypodium KQK21751
Barley HORVU7Hr1G080580.4 , HORVU7Hr1G080580.5 , HORVU7Hr1G080580.6 , HORVU7Hr1G080580.1 , HORVU7Hr1G080580.2 , HORVU7Hr1G080580.3
Wheat TraesCS7A02G344600 , TraesCS7D02G334900 , TraesCS7D02G334900 , TraesCS7B02G238500
Populus -


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cDNA sequences
Sobic.001G376700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
2 Sobic.006G084500 expressed protein -
3 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
4 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
5 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
6 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
7 Sobic.009G180800 aminotransferase, putative, expressed K01845: glutamate-1-semialdehyde 2,1-aminomutase
8 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
9 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
10 Sobic.003G381900 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed K00991: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
11 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
12 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
13 Sobic.007G162300 OsGrx_S12 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
14 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
15 Sobic.008G116400 acyl carrier protein, putative, expressed -
16 Sobic.002G353300 Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
17 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
18 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -
19 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
20 Sobic.006G161900 expressed protein K08331: autophagy-related protein 13


Gene co-expression network
sample Sobic001G376700 Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic009G124000 Sobic009G124000 Sobic001G376700--Sobic009G124000 Sobic003G420900 Sobic003G420900 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic004G296800--Sobic001G376700 Sobic001G543700 Sobic001G543700 Sobic004G296800--Sobic001G543700 Sobic004G296800--Sobic004G044200 Sobic004G296800--Sobic003G420900 Sobic002G207900 Sobic002G207900 Sobic004G296800--Sobic002G207900 Sobic007G026200 Sobic007G026200 Sobic004G296800--Sobic007G026200 Sobic004G296800--Sobic008G123600 Sobic001G541300 Sobic001G541300 Sobic004G296800--Sobic001G541300 Sobic005G218201 Sobic005G218201 Sobic004G296800--Sobic005G218201 Sobic006G084500--Sobic008G123600 Sobic002G020100 Sobic002G020100 Sobic006G084500--Sobic002G020100 Sobic001G003600 Sobic001G003600 Sobic006G084500--Sobic001G003600 Sobic006G172700 Sobic006G172700 Sobic006G084500--Sobic006G172700 Sobic001G069500 Sobic001G069500 Sobic006G084500--Sobic001G069500 Sobic004G076000 Sobic004G076000 Sobic006G084500--Sobic004G076000 Sobic007G090424 Sobic007G090424 Sobic006G084500--Sobic007G090424 Sobic005G056201 Sobic005G056201 Sobic006G084500--Sobic005G056201 Sobic009G059100 Sobic009G059100 Sobic006G084500--Sobic009G059100 Sobic004G044200--Sobic009G001500 Sobic007G013400 Sobic007G013400 Sobic004G044200--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic004G044200--Sobic003G295800 Sobic004G044200--Sobic001G541300 Sobic007G185100 Sobic007G185100 Sobic004G044200--Sobic007G185100 Sobic003G328200 Sobic003G328200 Sobic004G044200--Sobic003G328200 Sobic005G218600 Sobic005G218600 Sobic004G044200--Sobic005G218600 Sobic004G044200--Sobic005G218201 Sobic003G386300 Sobic003G386300 Sobic004G044200--Sobic003G386300 Sobic001G486700 Sobic001G486700 Sobic009G124000--Sobic001G486700 Sobic008G183700 Sobic008G183700 Sobic009G124000--Sobic008G183700 Sobic009G124000--Sobic001G376700 Sobic004G275600 Sobic004G275600 Sobic009G124000--Sobic004G275600 Sobic001G401700 Sobic001G401700 Sobic009G124000--Sobic001G401700 Sobic007G208300 Sobic007G208300 Sobic009G124000--Sobic007G208300 Sobic009G124000--Sobic003G292300 Sobic002G244500 Sobic002G244500 Sobic009G124000--Sobic002G244500 Sobic010G221600 Sobic010G221600 Sobic009G124000--Sobic010G221600 Sobic003G420900--Sobic001G376700 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic003G420900--Sobic001G543700 Sobic005G110481 Sobic005G110481 Sobic003G292300--Sobic005G110481 Sobic003G292300--Sobic001G069500 Sobic010G011200 Sobic010G011200 Sobic003G292300--Sobic010G011200 Sobic007G090537 Sobic007G090537 Sobic003G292300--Sobic007G090537 Sobic003G292300--Sobic009G001500 Sobic003G292300--Sobic003G295800 Sobic003G225100 Sobic003G225100 Sobic003G292300--Sobic003G225100 Sobic003G383600 Sobic003G383600 Sobic003G292300--Sobic003G383600 Sobic003G292300--Sobic007G013400 Sobic009G180800--Sobic008G123600 Sobic006G210800 Sobic006G210800 Sobic009G180800--Sobic006G210800 Sobic009G180800--Sobic003G295800 Sobic009G180800--Sobic009G001500 Sobic004G317900 Sobic004G317900 Sobic009G180800--Sobic004G317900 Sobic004G054500 Sobic004G054500 Sobic009G180800--Sobic004G054500 Sobic001G203000 Sobic001G203000 Sobic009G180800--Sobic001G203000 Sobic009G180800--Sobic007G013400 Sobic001G323801 Sobic001G323801 Sobic009G180800--Sobic001G323801 Sobic008G123600--Sobic004G076000 Sobic008G123600--Sobic003G383600 Sobic008G123600--Sobic001G003600 Sobic008G123600--Sobic001G323801 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic008G123600--Sobic003G295800 Sobic008G123600--Sobic006G172700 Sobic009G001500--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900
Octagon: transcription factors


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