Gene annotation
Transcriptome id Sobic.008G116400.1
Synonym Sb08g017000, ACP4
Functional annotation acyl carrier protein, putative, expressed
UniProt C5YPB9
Pfam PF00550
Panther DB PTHR20863 PTHR20863:SF29
NCBI CDD KOG1748; Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25050 : acyl carrier protein 4
RAP-DB (Rice) LOC_Os12g34890.1 : acyl carrier protein, putative, expressed
MaizeGDB (Corn) Zm00025a025546 , Zm00025a054368
Brachypodium -
Barley HORVU5Hr1G025960.4 , HORVU5Hr1G025960.1 , HORVU5Hr1G025960.3 , HORVU5Hr1G025960.2
Wheat TraesCS5D02G108700 , TraesCS5B02G102000 , TraesCS5A02G096100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G116400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
2 Sobic.009G180800 aminotransferase, putative, expressed K01845: glutamate-1-semialdehyde 2,1-aminomutase
3 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
4 Sobic.005G056201 - -
5 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
6 Sobic.001G323801 - -
7 Sobic.006G084500 expressed protein -
8 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
9 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
10 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
11 Sobic.003G383500 rhodanese-like, putative, expressed -
12 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
13 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
14 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
15 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
16 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
17 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
18 Sobic.008G064601 - -
19 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
20 Sobic.006G210800 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase


Gene co-expression network
sample Sobic008G116400 Sobic008G116400 Sobic001G376700 Sobic001G376700 Sobic008G116400--Sobic001G376700 Sobic009G180800 Sobic009G180800 Sobic008G116400--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic008G116400--Sobic008G123600 Sobic005G056201 Sobic005G056201 Sobic008G116400--Sobic005G056201 Sobic007G211100 Sobic007G211100 Sobic008G116400--Sobic007G211100 Sobic001G323801 Sobic001G323801 Sobic008G116400--Sobic001G323801 Sobic006G084500 Sobic006G084500 Sobic008G116400--Sobic006G084500 Sobic001G069500 Sobic001G069500 Sobic008G116400--Sobic001G069500 Sobic003G295800 Sobic003G295800 Sobic008G116400--Sobic003G295800 Sobic004G296800 Sobic004G296800 Sobic001G376700--Sobic004G296800 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic009G124000 Sobic009G124000 Sobic001G376700--Sobic009G124000 Sobic003G420900 Sobic003G420900 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic001G376700--Sobic009G180800 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic009G180800--Sobic008G123600 Sobic006G210800 Sobic006G210800 Sobic009G180800--Sobic006G210800 Sobic009G180800--Sobic003G295800 Sobic009G180800--Sobic009G001500 Sobic004G317900 Sobic004G317900 Sobic009G180800--Sobic004G317900 Sobic004G054500 Sobic004G054500 Sobic009G180800--Sobic004G054500 Sobic001G203000 Sobic001G203000 Sobic009G180800--Sobic001G203000 Sobic007G013400 Sobic007G013400 Sobic009G180800--Sobic007G013400 Sobic009G180800--Sobic001G323801 Sobic004G076000 Sobic004G076000 Sobic008G123600--Sobic004G076000 Sobic003G383600 Sobic003G383600 Sobic008G123600--Sobic003G383600 Sobic001G003600 Sobic001G003600 Sobic008G123600--Sobic001G003600 Sobic008G123600--Sobic001G323801 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic008G123600--Sobic003G295800 Sobic006G172700 Sobic006G172700 Sobic008G123600--Sobic006G172700 Sobic005G056201--Sobic006G172700 Sobic002G020100 Sobic002G020100 Sobic005G056201--Sobic002G020100 Sobic005G056201--Sobic001G003600 Sobic009G059100 Sobic009G059100 Sobic005G056201--Sobic009G059100 Sobic005G056201--Sobic004G076000 Sobic003G157500 Sobic003G157500 Sobic005G056201--Sobic003G157500 Sobic003G096100 Sobic003G096100 Sobic005G056201--Sobic003G096100 Sobic005G020200 Sobic005G020200 Sobic005G056201--Sobic005G020200 Sobic006G025700 Sobic006G025700 Sobic005G056201--Sobic006G025700 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic004G109000 Sobic004G109000 Sobic007G211100--Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic007G211100--Sobic008G123600 Sobic009G098100 Sobic009G098100 Sobic007G211100--Sobic009G098100 Sobic001G323801--Sobic004G076000 Sobic001G017000 Sobic001G017000 Sobic001G323801--Sobic001G017000 Sobic001G323801--Sobic008G123600 Sobic001G323801--Sobic009G115050 Sobic001G323801--Sobic004G317900 Sobic003G074600 Sobic003G074600 Sobic001G323801--Sobic003G074600 Sobic001G323801--Sobic003G295800 Sobic001G323801--Sobic001G003600 Sobic005G110436 Sobic005G110436 Sobic001G323801--Sobic005G110436 Sobic006G084500--Sobic008G123600 Sobic006G084500--Sobic002G020100 Sobic006G084500--Sobic001G003600 Sobic006G084500--Sobic006G172700 Sobic006G084500--Sobic001G069500 Sobic006G084500--Sobic004G076000 Sobic007G090424 Sobic007G090424 Sobic006G084500--Sobic007G090424 Sobic006G084500--Sobic005G056201 Sobic006G084500--Sobic009G059100 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.