Gene annotation
Transcriptome id Sobic.006G210800.1
Synonym LIN2, ATCPO-I, HEMF1, Sb06g028140
Functional annotation coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
UniProt C5YFN1
Pfam PF01218
Panther DB PTHR10755 PTHR10755:SF7
NCBI CDD -
KEGG Orthology K00228; CPOX, coproporphyrinogen III oxidase
Gene Ontology GO:0006779; porphyrin-containing compound biosynthetic process GO:0004109coproporphyrinogen oxidase activity


Orthologs (automatic annotation)
TAIR AT1G03475 : Coproporphyrinogen III oxidase
RAP-DB (Rice) LOC_Os04g52130.1 : coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a009836 , Zm00025a057004
Brachypodium KQJ84506
Barley HORVU2Hr1G099770.9 , HORVU2Hr1G099770.4 , HORVU2Hr1G099770.5 , HORVU2Hr1G099770.6 , HORVU2Hr1G099770.7 , HORVU2Hr1G099770.1 , HORVU2Hr1G099770.2 , HORVU2Hr1G099770.3 , HORVU2Hr1G099770.8
Wheat TraesCS2A02G426900 , TraesCS2B02G447300 , TraesCS2D02G425000
Populus -


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cDNA sequences
Sobic.006G210800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G180800 aminotransferase, putative, expressed K01845: glutamate-1-semialdehyde 2,1-aminomutase
2 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
3 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
4 Sobic.007G116950 - -
5 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
6 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
7 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
8 Sobic.004G114800 expressed protein -
9 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
10 Sobic.004G317900 expressed protein -
11 Sobic.001G202600 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
12 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -
13 Sobic.002G297300 expressed protein -
14 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
15 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
16 Sobic.003G099400 cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
17 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
18 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
19 Sobic.001G042301 - -
20 Sobic.009G091850 - -


Gene co-expression network
sample Sobic006G210800 Sobic006G210800 Sobic009G180800 Sobic009G180800 Sobic006G210800--Sobic009G180800 Sobic001G203000 Sobic001G203000 Sobic006G210800--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic006G210800--Sobic008G051000 Sobic007G116950 Sobic007G116950 Sobic006G210800--Sobic007G116950 Sobic004G234200 Sobic004G234200 Sobic006G210800--Sobic004G234200 Sobic004G238500 Sobic004G238500 Sobic006G210800--Sobic004G238500 Sobic001G382100 Sobic001G382100 Sobic006G210800--Sobic001G382100 Sobic004G114800 Sobic004G114800 Sobic006G210800--Sobic004G114800 Sobic004G054500 Sobic004G054500 Sobic006G210800--Sobic004G054500 Sobic008G123600 Sobic008G123600 Sobic009G180800--Sobic008G123600 Sobic009G180800--Sobic006G210800 Sobic003G295800 Sobic003G295800 Sobic009G180800--Sobic003G295800 Sobic009G001500 Sobic009G001500 Sobic009G180800--Sobic009G001500 Sobic004G317900 Sobic004G317900 Sobic009G180800--Sobic004G317900 Sobic009G180800--Sobic004G054500 Sobic009G180800--Sobic001G203000 Sobic007G013400 Sobic007G013400 Sobic009G180800--Sobic007G013400 Sobic001G323801 Sobic001G323801 Sobic009G180800--Sobic001G323801 Sobic001G203000--Sobic008G051000 Sobic001G203000--Sobic004G114800 Sobic001G203000--Sobic007G116950 Sobic001G203000--Sobic004G054500 Sobic010G255600 Sobic010G255600 Sobic001G203000--Sobic010G255600 Sobic001G203000--Sobic004G234200 Sobic001G203000--Sobic001G382100 Sobic009G091800 Sobic009G091800 Sobic001G203000--Sobic009G091800 Sobic001G203000--Sobic004G238500 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic003G132100 Sobic003G132100 Sobic008G051000--Sobic003G132100 Sobic006G264201 Sobic006G264201 Sobic008G051000--Sobic006G264201 Sobic009G091850 Sobic009G091850 Sobic008G051000--Sobic009G091850 Sobic008G051000--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic008G051000--Sobic002G297300 Sobic007G116950--Sobic008G051000 Sobic007G116950--Sobic009G091850 Sobic007G116950--Sobic001G203000 Sobic007G116950--Sobic006G264201 Sobic007G116950--Sobic004G238500 Sobic003G099400 Sobic003G099400 Sobic007G116950--Sobic003G099400 Sobic007G116950--Sobic009G091800 Sobic007G116950--Sobic004G114800 Sobic007G116950--Sobic001G382100 Sobic004G234200--Sobic009G091800 Sobic010G022100 Sobic010G022100 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G193400 Sobic004G193400 Sobic004G234200--Sobic004G193400 Sobic002G288300 Sobic002G288300 Sobic004G234200--Sobic002G288300 Sobic004G234200--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic004G234200--Sobic002G414400 Sobic010G000500 Sobic010G000500 Sobic004G234200--Sobic010G000500 Sobic004G234200--Sobic004G114800 Sobic004G238500--Sobic006G264201 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic002G329600 Sobic002G329600 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic004G238500--Sobic007G116950 Sobic004G238500--Sobic003G132100 Sobic004G238500--Sobic001G382100 Sobic007G029300 Sobic007G029300 Sobic004G238500--Sobic007G029300 Sobic001G382100--Sobic010G255600 Sobic001G382100--Sobic003G099400 Sobic001G382100--Sobic004G238500 Sobic001G382100--Sobic008G051000 Sobic001G382100--Sobic001G203000 Sobic001G382100--Sobic009G091850 Sobic001G382100--Sobic007G116950 Sobic001G382100--Sobic004G114800 Sobic006G100900 Sobic006G100900 Sobic001G382100--Sobic006G100900 Sobic004G114800--Sobic001G203000 Sobic004G114800--Sobic004G234200 Sobic004G114800--Sobic006G100900 Sobic004G114800--Sobic008G051000 Sobic004G114800--Sobic009G091800 Sobic004G114800--Sobic007G116950 Sobic004G114800--Sobic001G382100 Sobic002G328900 Sobic002G328900 Sobic004G114800--Sobic002G328900 Sobic004G114800--Sobic004G238500 Sobic004G054500--Sobic001G203000 Sobic004G054500--Sobic008G051000 Sobic007G143700 Sobic007G143700 Sobic004G054500--Sobic007G143700 Sobic004G054500--Sobic004G317900 Sobic001G040000 Sobic001G040000 Sobic004G054500--Sobic001G040000 Sobic004G054500--Sobic010G255600 Sobic004G335800 Sobic004G335800 Sobic004G054500--Sobic004G335800 Sobic003G157400 Sobic003G157400 Sobic004G054500--Sobic003G157400 Sobic003G386300 Sobic003G386300 Sobic004G054500--Sobic003G386300
Octagon: transcription factors


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