Gene annotation
Transcriptome id Sobic.001G202600.1
Synonym Sb01g017860, HEMA1
Functional annotation shikimate/quinate 5-dehydrogenase, putative, expressed
UniProt C5WWF1
Pfam PF03807 PF00745 PF05201
Panther DB PTHR13812 PTHR13812:SF20
NCBI CDD -
KEGG Orthology K02492; glutamyl-tRNA reductase
Gene Ontology GO:0008883; glutamyl-tRNA reductase activity


Orthologs (automatic annotation)
TAIR AT1G58290 : Glutamyl-tRNA reductase family protein
RAP-DB (Rice) LOC_Os10g35840.1 : shikimate/quinate 5-dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a017483 , Zm00025a057153 , Zm00025a006419
Brachypodium PNT67652 , KQJ94535
Barley HORVU1Hr1G045590.2 , HORVU1Hr1G045590.3 , HORVU1Hr1G045590.1 , HORVU1Hr1G045590.4 , HORVU1Hr1G045590.5 , HORVU7Hr1G026300.6 , HORVU7Hr1G026300.7 , HORVU7Hr1G026300.4 , HORVU7Hr1G026300.5 , HORVU7Hr1G026300.2 , HORVU7Hr1G026300.3 , HORVU7Hr1G026300.1 , HORVU1Hr1G011520.6 , HORVU1Hr1G011520.4 , HORVU1Hr1G011520.5 , HORVU1Hr1G011520.2 , HORVU1Hr1G011520.3 , HORVU1Hr1G011520.1
Wheat TraesCS7D02G122600 , TraesCS1B02G075200 , TraesCS1A02G057200 , TraesCS1A02G057200 , TraesCS1A02G173100 , TraesCS1D02G058300 , TraesCS1D02G058300 , TraesCS1A02G173100 , TraesCS1D02G165600 , TraesCS7B02G024500 , TraesCS1B02G191200 , TraesCS7B02G024500 , TraesCS7A02G125600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
2 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
3 Sobic.004G251500 -(PubMedID : 29017446)@arsenate reductase, putative, expressed -
4 Sobic.001G489000 NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed -
5 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
6 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
7 Sobic.007G116950 - -
8 Sobic.009G091850 - -
9 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
10 Sobic.007G004600 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
11 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
12 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
13 Sobic.006G210800 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
14 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
15 Sobic.001G023700 expressed protein -
16 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
17 Sobic.007G162300 OsGrx_S12 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.006G149000 expressed protein -
19 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
20 Sobic.002G198000 CRR6, putative, expressed -


Gene co-expression network
sample Sobic001G202600 Sobic001G202600 Sobic009G091800 Sobic009G091800 Sobic001G202600--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic001G202600--Sobic002G288300 Sobic004G251500 Sobic004G251500 Sobic001G202600--Sobic004G251500 Sobic001G489000 Sobic001G489000 Sobic001G202600--Sobic001G489000 Sobic004G311100 Sobic004G311100 Sobic001G202600--Sobic004G311100 Sobic008G112300 Sobic008G112300 Sobic001G202600--Sobic008G112300 Sobic007G116950 Sobic007G116950 Sobic001G202600--Sobic007G116950 Sobic009G091850 Sobic009G091850 Sobic001G202600--Sobic009G091850 Sobic008G051000 Sobic008G051000 Sobic001G202600--Sobic008G051000 Sobic009G091800--Sobic008G051000 Sobic009G091800--Sobic002G288300 Sobic004G234200 Sobic004G234200 Sobic009G091800--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic009G091800--Sobic002G297300 Sobic010G022100 Sobic010G022100 Sobic009G091800--Sobic010G022100 Sobic006G264201 Sobic006G264201 Sobic009G091800--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic009G091800--Sobic004G238500 Sobic010G000500 Sobic010G000500 Sobic009G091800--Sobic010G000500 Sobic009G091800--Sobic007G116950 Sobic002G288300--Sobic009G091800 Sobic002G288300--Sobic010G022100 Sobic002G288300--Sobic010G000500 Sobic002G288300--Sobic004G234200 Sobic002G338000 Sobic002G338000 Sobic002G288300--Sobic002G338000 Sobic002G414400 Sobic002G414400 Sobic002G288300--Sobic002G414400 Sobic010G011800 Sobic010G011800 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic006G264900 Sobic006G264900 Sobic002G288300--Sobic006G264900 Sobic007G004600 Sobic007G004600 Sobic004G251500--Sobic007G004600 Sobic004G251500--Sobic009G091850 Sobic010G277600 Sobic010G277600 Sobic004G251500--Sobic010G277600 Sobic008G172700 Sobic008G172700 Sobic004G251500--Sobic008G172700 Sobic009G183700 Sobic009G183700 Sobic004G251500--Sobic009G183700 Sobic004G251500--Sobic004G311100 Sobic004G239100 Sobic004G239100 Sobic004G251500--Sobic004G239100 Sobic009G143100 Sobic009G143100 Sobic004G251500--Sobic009G143100 Sobic001G527000 Sobic001G527000 Sobic004G251500--Sobic001G527000 Sobic002G051100 Sobic002G051100 Sobic001G489000--Sobic002G051100 Sobic009G140600 Sobic009G140600 Sobic001G489000--Sobic009G140600 Sobic005G194100 Sobic005G194100 Sobic001G489000--Sobic005G194100 Sobic003G387800 Sobic003G387800 Sobic001G489000--Sobic003G387800 Sobic001G489000--Sobic009G183700 Sobic008G102000 Sobic008G102000 Sobic001G489000--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic001G489000--Sobic003G002300 Sobic008G134800 Sobic008G134800 Sobic001G489000--Sobic008G134800 Sobic007G004800 Sobic007G004800 Sobic001G489000--Sobic007G004800 Sobic004G311100--Sobic008G112300 Sobic007G143700 Sobic007G143700 Sobic004G311100--Sobic007G143700 Sobic003G386300 Sobic003G386300 Sobic004G311100--Sobic003G386300 Sobic004G335800 Sobic004G335800 Sobic004G311100--Sobic004G335800 Sobic001G122400 Sobic001G122400 Sobic004G311100--Sobic001G122400 Sobic001G527100 Sobic001G527100 Sobic004G311100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G311100--Sobic004G116100 Sobic003G328200 Sobic003G328200 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700 Sobic008G112300--Sobic004G311100 Sobic008G112300--Sobic003G328200 Sobic008G112300--Sobic009G091800 Sobic008G112300--Sobic001G527100 Sobic008G112300--Sobic007G143700 Sobic002G297900 Sobic002G297900 Sobic008G112300--Sobic002G297900 Sobic008G112300--Sobic004G116100 Sobic004G317900 Sobic004G317900 Sobic008G112300--Sobic004G317900 Sobic008G112300--Sobic004G335800 Sobic007G116950--Sobic008G051000 Sobic007G116950--Sobic009G091850 Sobic001G203000 Sobic001G203000 Sobic007G116950--Sobic001G203000 Sobic007G116950--Sobic006G264201 Sobic007G116950--Sobic004G238500 Sobic003G099400 Sobic003G099400 Sobic007G116950--Sobic003G099400 Sobic007G116950--Sobic009G091800 Sobic004G114800 Sobic004G114800 Sobic007G116950--Sobic004G114800 Sobic001G382100 Sobic001G382100 Sobic007G116950--Sobic001G382100 Sobic009G091850--Sobic007G116950 Sobic009G091850--Sobic001G527000 Sobic009G091850--Sobic008G051000 Sobic010G255600 Sobic010G255600 Sobic009G091850--Sobic010G255600 Sobic003G132100 Sobic003G132100 Sobic009G091850--Sobic003G132100 Sobic003G433900 Sobic003G433900 Sobic009G091850--Sobic003G433900 Sobic009G091850--Sobic001G382100 Sobic009G091850--Sobic007G004600 Sobic009G091850--Sobic009G091800 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic008G051000--Sobic009G091850 Sobic008G051000--Sobic004G234200 Sobic008G051000--Sobic002G297300
Octagon: transcription factors


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