Gene annotation
| Transcriptome id | Sobic.006G149000.1 |
|---|---|
| Synonym | |
| Functional annotation | expressed protein |
| UniProt | A0A1B6PM27 |
| Pfam | - |
| Panther DB | PTHR33727 PTHR33727:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G31335 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os04g43820.1 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G202600 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 2 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 3 | Sobic.002G339200 | Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08914: light-harvesting complex II chlorophyll a/b binding protein 3 |
| 4 | Sobic.006G210800 | coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed | K00228: CPOX, coproporphyrinogen III oxidase |
| 5 | Sobic.006G264900 | -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed | K03403: chlH, magnesium chelatase subunit H |
| 6 | Sobic.009G234600 | Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 7 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 8 | Sobic.010G000500 | Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed | K02638: plastocyanin |
| 9 | Sobic.005G042000 | Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed | K01602: ribulose-bisphosphate carboxylase small chain |
| 10 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 11 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 12 | Sobic.007G116950 | - | - |
| 13 | Sobic.001G078000 | Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed | - |
| 14 | Sobic.002G288300 | Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 15 | Sobic.002G338000 | Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08915: light-harvesting complex II chlorophyll a/b binding protein 4 |
| 16 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 17 | Sobic.007G162300 | OsGrx_S12 - glutaredoxin subgroup I, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 18 | Sobic.010G241000 | oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed | K02716: photosystem II oxygen-evolving enhancer protein 1 |
| 19 | Sobic.007G029300 | acyl-activating enzyme 14, putative, expressed | K14760: acyl-activating enzyme 14 |
| 20 | Sobic.005G087000 | Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08916: light-harvesting complex II chlorophyll a/b binding protein 5 |
Gene co-expression network
Octagon: transcription factors
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