Gene annotation
Transcriptome id Sobic.009G180800.1
Synonym Sb09g024120, GSA2
Functional annotation aminotransferase, putative, expressed
UniProt A0A1B6P988
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF84
NCBI CDD KOG1401; Acetylornithine aminotransferase
KEGG Orthology K01845; glutamate-1-semialdehyde 2,1-aminomutase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT3G48730 : glutamate-1-semialdehyde 2,1-aminomutase 2
RAP-DB (Rice) LOC_Os08g41990.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a044076
Brachypodium KQJ99122
Barley HORVU7Hr1G054360.1 , HORVU7Hr1G054380.3 , HORVU7Hr1G054380.2 , HORVU7Hr1G054380.1
Wheat TraesCS7D02G261800 , TraesCS7D02G261800 , TraesCS7B02G158800 , TraesCS7A02G260800 , TraesCS7A02G260800
Populus -


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cDNA sequences
Sobic.009G180800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
2 Sobic.006G210800 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
3 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
4 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
5 Sobic.004G317900 expressed protein -
6 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
7 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
8 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
9 Sobic.001G323801 - -
10 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
11 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
12 Sobic.004G114800 expressed protein -
13 Sobic.003G383600 - -
14 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
15 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
16 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
17 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
18 Sobic.006G084500 expressed protein -
19 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
20 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic009G180800 Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic009G180800--Sobic008G123600 Sobic006G210800 Sobic006G210800 Sobic009G180800--Sobic006G210800 Sobic003G295800 Sobic003G295800 Sobic009G180800--Sobic003G295800 Sobic009G001500 Sobic009G001500 Sobic009G180800--Sobic009G001500 Sobic004G317900 Sobic004G317900 Sobic009G180800--Sobic004G317900 Sobic004G054500 Sobic004G054500 Sobic009G180800--Sobic004G054500 Sobic001G203000 Sobic001G203000 Sobic009G180800--Sobic001G203000 Sobic007G013400 Sobic007G013400 Sobic009G180800--Sobic007G013400 Sobic001G323801 Sobic001G323801 Sobic009G180800--Sobic001G323801 Sobic004G076000 Sobic004G076000 Sobic008G123600--Sobic004G076000 Sobic003G383600 Sobic003G383600 Sobic008G123600--Sobic003G383600 Sobic001G003600 Sobic001G003600 Sobic008G123600--Sobic001G003600 Sobic008G123600--Sobic001G323801 Sobic001G069500 Sobic001G069500 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic008G123600--Sobic003G295800 Sobic006G172700 Sobic006G172700 Sobic008G123600--Sobic006G172700 Sobic006G210800--Sobic009G180800 Sobic006G210800--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic006G210800--Sobic008G051000 Sobic007G116950 Sobic007G116950 Sobic006G210800--Sobic007G116950 Sobic004G234200 Sobic004G234200 Sobic006G210800--Sobic004G234200 Sobic004G238500 Sobic004G238500 Sobic006G210800--Sobic004G238500 Sobic001G382100 Sobic001G382100 Sobic006G210800--Sobic001G382100 Sobic004G114800 Sobic004G114800 Sobic006G210800--Sobic004G114800 Sobic006G210800--Sobic004G054500 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic003G246400 Sobic003G246400 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic010G233800 Sobic010G233800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic004G317900--Sobic003G328200 Sobic004G317900--Sobic001G017000 Sobic004G317900--Sobic004G054500 Sobic004G054500--Sobic001G203000 Sobic004G054500--Sobic008G051000 Sobic007G143700 Sobic007G143700 Sobic004G054500--Sobic007G143700 Sobic004G054500--Sobic004G317900 Sobic004G054500--Sobic001G040000 Sobic010G255600 Sobic010G255600 Sobic004G054500--Sobic010G255600 Sobic004G335800 Sobic004G335800 Sobic004G054500--Sobic004G335800 Sobic003G157400 Sobic003G157400 Sobic004G054500--Sobic003G157400 Sobic003G386300 Sobic003G386300 Sobic004G054500--Sobic003G386300 Sobic001G203000--Sobic008G051000 Sobic001G203000--Sobic004G114800 Sobic001G203000--Sobic007G116950 Sobic001G203000--Sobic004G054500 Sobic001G203000--Sobic010G255600 Sobic001G203000--Sobic004G234200 Sobic001G203000--Sobic001G382100 Sobic009G091800 Sobic009G091800 Sobic001G203000--Sobic009G091800 Sobic001G203000--Sobic004G238500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic001G323801--Sobic004G076000 Sobic001G323801--Sobic001G017000 Sobic001G323801--Sobic008G123600 Sobic001G323801--Sobic009G115050 Sobic001G323801--Sobic004G317900 Sobic003G074600 Sobic003G074600 Sobic001G323801--Sobic003G074600 Sobic001G323801--Sobic003G295800 Sobic001G323801--Sobic001G003600 Sobic005G110436 Sobic005G110436 Sobic001G323801--Sobic005G110436
Octagon: transcription factors


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