Gene annotation
Transcriptome id Sobic.003G071600.1
Synonym TSC13, CER10, ECR, ATTSC13, Sb03g006070
Functional annotation 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
UniProt C5XPZ2
Pfam PF02544
Panther DB PTHR10556 PTHR10556:SF28
NCBI CDD KOG1639; Steroid reductase required for elongation of the very long chain fatty acids
KEGG Orthology K10258; TER, TSC13, very-long-chain enoyl-CoA reductase
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors GO:0016021integral component of membrane GO:0006629lipid metabolic process GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G55360 : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g05670.1 : 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a023460 , Zm00025a035622
Brachypodium KQK02726
Barley HORVU3Hr1G013790.1 , HORVU3Hr1G013790.3 , HORVU3Hr1G013790.2 , HORVU3Hr1G013790.5 , HORVU3Hr1G013790.4 , HORVU3Hr1G013790.6
Wheat TraesCS3A02G074900 , TraesCSU02G049100 , TraesCS3D02G074700
Populus -


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cDNA sequences
Sobic.003G071600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
2 Sobic.009G083300 white-brown complex homolog protein 12, putative, expressed -
3 Sobic.002G064400 expressed protein -
4 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
5 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
6 Sobic.004G208600 glycine-rich protein, putative, expressed -
7 Sobic.005G084000 expressed protein -
8 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
9 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
10 Sobic.003G069200 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
11 Sobic.001G142400 RIO1 family protein, expressed -
12 Sobic.001G384800 expressed protein -
13 Sobic.001G495300 expressed protein -
14 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
15 Sobic.007G201400 pentatricopeptide, putative, expressed -
16 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
17 Sobic.002G242600 expressed protein -
18 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G383500 rhodanese-like, putative, expressed -
20 Sobic.006G248200 - -


Gene co-expression network
sample Sobic003G071600 Sobic003G071600 Sobic001G296400 Sobic001G296400 Sobic003G071600--Sobic001G296400 Sobic009G083300 Sobic009G083300 Sobic003G071600--Sobic009G083300 Sobic002G064400 Sobic002G064400 Sobic003G071600--Sobic002G064400 Sobic008G008500 Sobic008G008500 Sobic003G071600--Sobic008G008500 Sobic003G265500 Sobic003G265500 Sobic003G071600--Sobic003G265500 Sobic004G208600 Sobic004G208600 Sobic003G071600--Sobic004G208600 Sobic005G084000 Sobic005G084000 Sobic003G071600--Sobic005G084000 Sobic001G543700 Sobic001G543700 Sobic003G071600--Sobic001G543700 Sobic004G015700 Sobic004G015700 Sobic003G071600--Sobic004G015700 Sobic001G296400--Sobic003G071600 Sobic004G175600 Sobic004G175600 Sobic001G296400--Sobic004G175600 Sobic001G296400--Sobic004G208600 Sobic006G216000 Sobic006G216000 Sobic001G296400--Sobic006G216000 Sobic001G063800 Sobic001G063800 Sobic001G296400--Sobic001G063800 Sobic003G420900 Sobic003G420900 Sobic001G296400--Sobic003G420900 Sobic007G171950 Sobic007G171950 Sobic001G296400--Sobic007G171950 Sobic008G173000 Sobic008G173000 Sobic001G296400--Sobic008G173000 Sobic001G384800 Sobic001G384800 Sobic001G296400--Sobic001G384800 Sobic003G069200 Sobic003G069200 Sobic009G083300--Sobic003G069200 Sobic009G083300--Sobic008G008500 Sobic006G155700 Sobic006G155700 Sobic009G083300--Sobic006G155700 Sobic009G083300--Sobic004G015700 Sobic009G083300--Sobic002G064400 Sobic009G083300--Sobic005G084000 Sobic009G083300--Sobic003G071600 Sobic001G142400 Sobic001G142400 Sobic009G083300--Sobic001G142400 Sobic001G099000 Sobic001G099000 Sobic009G083300--Sobic001G099000 Sobic002G064400--Sobic008G008500 Sobic002G190100 Sobic002G190100 Sobic002G064400--Sobic002G190100 Sobic001G215300 Sobic001G215300 Sobic002G064400--Sobic001G215300 Sobic001G236800 Sobic001G236800 Sobic002G064400--Sobic001G236800 Sobic002G064400--Sobic009G083300 Sobic007G206100 Sobic007G206100 Sobic002G064400--Sobic007G206100 Sobic002G242600 Sobic002G242600 Sobic002G064400--Sobic002G242600 Sobic002G064400--Sobic001G142400 Sobic002G064400--Sobic004G015700 Sobic008G008500--Sobic002G064400 Sobic008G008500--Sobic009G083300 Sobic007G123200 Sobic007G123200 Sobic008G008500--Sobic007G123200 Sobic008G130700 Sobic008G130700 Sobic008G008500--Sobic008G130700 Sobic008G008500--Sobic002G190100 Sobic007G090415 Sobic007G090415 Sobic008G008500--Sobic007G090415 Sobic008G008500--Sobic001G142400 Sobic008G008500--Sobic003G071600 Sobic006G060500 Sobic006G060500 Sobic008G008500--Sobic006G060500 Sobic003G225100 Sobic003G225100 Sobic003G265500--Sobic003G225100 Sobic005G184300 Sobic005G184300 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic010G221600 Sobic010G221600 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic002G353300 Sobic002G353300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800 Sobic004G225600 Sobic004G225600 Sobic004G208600--Sobic004G225600 Sobic004G208600--Sobic001G384800 Sobic007G095500 Sobic007G095500 Sobic004G208600--Sobic007G095500 Sobic001G202000 Sobic001G202000 Sobic004G208600--Sobic001G202000 Sobic001G514100 Sobic001G514100 Sobic004G208600--Sobic001G514100 Sobic008G090900 Sobic008G090900 Sobic004G208600--Sobic008G090900 Sobic004G208600--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic004G208600--Sobic007G116100 Sobic004G255500 Sobic004G255500 Sobic004G208600--Sobic004G255500 Sobic001G495300 Sobic001G495300 Sobic005G084000--Sobic001G495300 Sobic007G210600 Sobic007G210600 Sobic005G084000--Sobic007G210600 Sobic008G131700 Sobic008G131700 Sobic005G084000--Sobic008G131700 Sobic005G084000--Sobic001G142400 Sobic003G074700 Sobic003G074700 Sobic005G084000--Sobic003G074700 Sobic004G143400 Sobic004G143400 Sobic005G084000--Sobic004G143400 Sobic005G084000--Sobic009G083300 Sobic007G201400 Sobic007G201400 Sobic005G084000--Sobic007G201400 Sobic005G084000--Sobic003G069200 Sobic001G543700--Sobic010G221600 Sobic004G214400 Sobic004G214400 Sobic001G543700--Sobic004G214400 Sobic006G281066 Sobic006G281066 Sobic001G543700--Sobic006G281066 Sobic003G236300 Sobic003G236300 Sobic001G543700--Sobic003G236300 Sobic006G082500 Sobic006G082500 Sobic001G543700--Sobic006G082500 Sobic004G296800 Sobic004G296800 Sobic001G543700--Sobic004G296800 Sobic001G543700--Sobic003G071600 Sobic001G543700--Sobic003G265500 Sobic001G478600 Sobic001G478600 Sobic001G543700--Sobic001G478600 Sobic006G263800 Sobic006G263800 Sobic004G015700--Sobic006G263800 Sobic003G383500 Sobic003G383500 Sobic004G015700--Sobic003G383500 Sobic004G015700--Sobic009G083300 Sobic007G013400 Sobic007G013400 Sobic004G015700--Sobic007G013400 Sobic004G015700--Sobic001G099000 Sobic004G015700--Sobic001G236800 Sobic004G015700--Sobic002G190100 Sobic009G212000 Sobic009G212000 Sobic004G015700--Sobic009G212000 Sobic003G261200 Sobic003G261200 Sobic004G015700--Sobic003G261200
Octagon: transcription factors


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