Gene annotation
Transcriptome id Sobic.001G296400.7,Sobic.001G296400.2,Sobic.001G296400.4,Sobic.001G296400.5,Sobic.001G296400.1,Sobic.001G296400.3,Sobic.001G296400.6
Synonym Sb01g028940
Functional annotation palmitoyl-protein thioesterase 1 precursor, putative, expressed
UniProt A0A1Z5S886 , A0A1Z5S880 , C5WRI6 , A0A1B6QLY0 , A0A1Z5S883 , A0A1B6QLX2 , A0A1Z5S8H6
Pfam PF02089
Panther DB PTHR11247 PTHR11247:SF26
NCBI CDD KOG2541; Palmitoyl protein thioesterase
KEGG Orthology K01074; palmitoyl-protein thioesterase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G60340 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os10g41340.1 : palmitoyl-protein thioesterase 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051928
Brachypodium KQJ97819 , KQK24173 , KQK24172
Barley HORVU4Hr1G088720.22 , HORVU4Hr1G088720.20 , HORVU4Hr1G088720.21 , HORVU4Hr1G088720.9 , HORVU4Hr1G088720.8 , HORVU4Hr1G088720.3 , HORVU4Hr1G088720.2 , HORVU4Hr1G088720.1 , HORVU4Hr1G088720.7 , HORVU4Hr1G088720.6 , HORVU4Hr1G088720.4 , HORVU4Hr1G088720.5 , HORVU1Hr1G055630.2 , HORVU1Hr1G055600.8 , HORVU1Hr1G055600.7 , HORVU1Hr1G055600.6 , HORVU1Hr1G055600.5 , HORVU1Hr1G055600.1 , HORVU4Hr1G088720.19 , HORVU4Hr1G088720.13 , HORVU4Hr1G088720.12 , HORVU4Hr1G088720.11 , HORVU4Hr1G088720.10 , HORVU4Hr1G088720.17 , HORVU4Hr1G088720.16 , HORVU4Hr1G088720.15 , HORVU4Hr1G088720.14 , HORVU4Hr1G088720.18
Wheat TraesCS4B02G358000 , TraesCS1D02G219700 , TraesCS1D02G219700 , TraesCS1B02G231400 , TraesCS1B02G231400 , TraesCS5A02G527100 , TraesCS4D02G366100 , TraesCS4B02G371300
Populus -


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cDNA sequences
Sobic.001G296400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
2 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.004G208600 glycine-rich protein, putative, expressed -
4 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.001G063800 ML domain protein, putative, expressed -
6 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
7 Sobic.007G171950 - -
8 Sobic.008G173000 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
9 Sobic.001G384800 expressed protein -
10 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
11 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
12 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
13 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
14 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
15 Sobic.001G306700 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G245900 membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
18 Sobic.002G064400 expressed protein -
19 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1
20 Sobic.009G001100 expressed protein -


Gene co-expression network
sample Sobic001G296400 Sobic001G296400 Sobic003G071600 Sobic003G071600 Sobic001G296400--Sobic003G071600 Sobic004G175600 Sobic004G175600 Sobic001G296400--Sobic004G175600 Sobic004G208600 Sobic004G208600 Sobic001G296400--Sobic004G208600 Sobic006G216000 Sobic006G216000 Sobic001G296400--Sobic006G216000 Sobic001G063800 Sobic001G063800 Sobic001G296400--Sobic001G063800 Sobic003G420900 Sobic003G420900 Sobic001G296400--Sobic003G420900 Sobic007G171950 Sobic007G171950 Sobic001G296400--Sobic007G171950 Sobic008G173000 Sobic008G173000 Sobic001G296400--Sobic008G173000 Sobic001G384800 Sobic001G384800 Sobic001G296400--Sobic001G384800 Sobic003G071600--Sobic001G296400 Sobic009G083300 Sobic009G083300 Sobic003G071600--Sobic009G083300 Sobic002G064400 Sobic002G064400 Sobic003G071600--Sobic002G064400 Sobic008G008500 Sobic008G008500 Sobic003G071600--Sobic008G008500 Sobic003G265500 Sobic003G265500 Sobic003G071600--Sobic003G265500 Sobic003G071600--Sobic004G208600 Sobic005G084000 Sobic005G084000 Sobic003G071600--Sobic005G084000 Sobic001G543700 Sobic001G543700 Sobic003G071600--Sobic001G543700 Sobic004G015700 Sobic004G015700 Sobic003G071600--Sobic004G015700 Sobic004G175600--Sobic001G063800 Sobic004G175600--Sobic001G296400 Sobic007G095500 Sobic007G095500 Sobic004G175600--Sobic007G095500 Sobic003G174800 Sobic003G174800 Sobic004G175600--Sobic003G174800 Sobic004G175600--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic004G175600--Sobic004G225600 Sobic001G428000 Sobic001G428000 Sobic004G175600--Sobic001G428000 Sobic004G019500 Sobic004G019500 Sobic004G175600--Sobic004G019500 Sobic007G203200 Sobic007G203200 Sobic004G175600--Sobic007G203200 Sobic004G208600--Sobic004G225600 Sobic004G208600--Sobic001G384800 Sobic004G208600--Sobic007G095500 Sobic001G202000 Sobic001G202000 Sobic004G208600--Sobic001G202000 Sobic001G514100 Sobic001G514100 Sobic004G208600--Sobic001G514100 Sobic008G090900 Sobic008G090900 Sobic004G208600--Sobic008G090900 Sobic001G099000 Sobic001G099000 Sobic004G208600--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic004G208600--Sobic007G116100 Sobic004G255500 Sobic004G255500 Sobic004G208600--Sobic004G255500 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic002G253100 Sobic002G253100 Sobic006G216000--Sobic002G253100 Sobic003G119400 Sobic003G119400 Sobic006G216000--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic001G152000 Sobic001G152000 Sobic006G216000--Sobic001G152000 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic001G063800--Sobic004G175600 Sobic008G011300 Sobic008G011300 Sobic001G063800--Sobic008G011300 Sobic003G218801 Sobic003G218801 Sobic001G063800--Sobic003G218801 Sobic001G063800--Sobic001G296400 Sobic010G204900 Sobic010G204900 Sobic001G063800--Sobic010G204900 Sobic001G250700 Sobic001G250700 Sobic001G063800--Sobic001G250700 Sobic001G063800--Sobic003G265500 Sobic001G032200 Sobic001G032200 Sobic001G063800--Sobic001G032200 Sobic002G072300 Sobic002G072300 Sobic001G063800--Sobic002G072300 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic003G420900--Sobic001G543700 Sobic008G067100 Sobic008G067100 Sobic007G171950--Sobic008G067100 Sobic001G096300 Sobic001G096300 Sobic007G171950--Sobic001G096300 Sobic007G171950--Sobic007G095500 Sobic002G122600 Sobic002G122600 Sobic007G171950--Sobic002G122600 Sobic007G171950--Sobic001G296400 Sobic010G108900 Sobic010G108900 Sobic007G171950--Sobic010G108900 Sobic009G207100 Sobic009G207100 Sobic007G171950--Sobic009G207100 Sobic001G263000 Sobic001G263000 Sobic007G171950--Sobic001G263000 Sobic007G171950--Sobic003G265500 Sobic001G226100 Sobic001G226100 Sobic008G173000--Sobic001G226100 Sobic010G012600 Sobic010G012600 Sobic008G173000--Sobic010G012600 Sobic008G173000--Sobic006G252100 Sobic008G173000--Sobic001G296400 Sobic004G185600 Sobic004G185600 Sobic008G173000--Sobic004G185600 Sobic010G251100 Sobic010G251100 Sobic008G173000--Sobic010G251100 Sobic008G173000--Sobic001G263000 Sobic003G045400 Sobic003G045400 Sobic008G173000--Sobic003G045400 Sobic008G173000--Sobic006G216000 Sobic001G384800--Sobic004G208600 Sobic007G013000 Sobic007G013000 Sobic001G384800--Sobic007G013000 Sobic001G495300 Sobic001G495300 Sobic001G384800--Sobic001G495300 Sobic002G081500 Sobic002G081500 Sobic001G384800--Sobic002G081500 Sobic001G384800--Sobic001G202000 Sobic001G384800--Sobic005G084000 Sobic001G384800--Sobic001G099000 Sobic002G109000 Sobic002G109000 Sobic001G384800--Sobic002G109000 Sobic001G489800 Sobic001G489800 Sobic001G384800--Sobic001G489800
Octagon: transcription factors


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