Gene annotation
Transcriptome id Sobic.001G306700.1
Synonym EMB975, Sb01g029910
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6QM44
Pfam PF12854 PF01535 PF13812
Panther DB PTHR24015 PTHR24015:SF642
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01860 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g02590.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052036
Brachypodium PNT65741
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011300 expressed protein -
2 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
3 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
4 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase
5 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
6 Sobic.001G063800 ML domain protein, putative, expressed -
7 Sobic.006G037300 membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
9 Sobic.002G064400 expressed protein -
10 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
11 Sobic.010G154500 - -
12 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.001G201966 - -
14 Sobic.008G125100 Mur ligase family protein, putative, expressed -
15 Sobic.002G330500 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
16 Sobic.002G370000 gibberellin receptor GID1L2, putative, expressed -
17 Sobic.003G218801 - -
18 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.008G135701 - -
20 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase


Gene co-expression network
sample Sobic001G306700 Sobic001G306700 Sobic001G011300 Sobic001G011300 Sobic001G306700--Sobic001G011300 Sobic001G296400 Sobic001G296400 Sobic001G306700--Sobic001G296400 Sobic003G265500 Sobic003G265500 Sobic001G306700--Sobic003G265500 Sobic001G463500 Sobic001G463500 Sobic001G306700--Sobic001G463500 Sobic003G071600 Sobic003G071600 Sobic001G306700--Sobic003G071600 Sobic001G063800 Sobic001G063800 Sobic001G306700--Sobic001G063800 Sobic006G037300 Sobic006G037300 Sobic001G306700--Sobic006G037300 Sobic003G420900 Sobic003G420900 Sobic001G306700--Sobic003G420900 Sobic002G064400 Sobic002G064400 Sobic001G306700--Sobic002G064400 Sobic001G011300--Sobic001G306700 Sobic001G011300--Sobic003G265500 Sobic004G070800 Sobic004G070800 Sobic001G011300--Sobic004G070800 Sobic010G091200 Sobic010G091200 Sobic001G011300--Sobic010G091200 Sobic001G011300--Sobic001G463500 Sobic001G011300--Sobic003G420900 Sobic001G008700 Sobic001G008700 Sobic001G011300--Sobic001G008700 Sobic004G068300 Sobic004G068300 Sobic001G011300--Sobic004G068300 Sobic004G015700 Sobic004G015700 Sobic001G011300--Sobic004G015700 Sobic001G296400--Sobic003G071600 Sobic004G175600 Sobic004G175600 Sobic001G296400--Sobic004G175600 Sobic004G208600 Sobic004G208600 Sobic001G296400--Sobic004G208600 Sobic006G216000 Sobic006G216000 Sobic001G296400--Sobic006G216000 Sobic001G296400--Sobic001G063800 Sobic001G296400--Sobic003G420900 Sobic007G171950 Sobic007G171950 Sobic001G296400--Sobic007G171950 Sobic008G173000 Sobic008G173000 Sobic001G296400--Sobic008G173000 Sobic001G384800 Sobic001G384800 Sobic001G296400--Sobic001G384800 Sobic003G225100 Sobic003G225100 Sobic003G265500--Sobic003G225100 Sobic005G184300 Sobic005G184300 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic010G221600 Sobic010G221600 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic002G353300 Sobic002G353300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800 Sobic004G296800 Sobic004G296800 Sobic001G463500--Sobic004G296800 Sobic008G135701 Sobic008G135701 Sobic001G463500--Sobic008G135701 Sobic002G330500 Sobic002G330500 Sobic001G463500--Sobic002G330500 Sobic001G463500--Sobic001G008700 Sobic001G463500--Sobic003G420900 Sobic001G543700 Sobic001G543700 Sobic001G463500--Sobic001G543700 Sobic001G463500--Sobic001G011300 Sobic002G253100 Sobic002G253100 Sobic001G463500--Sobic002G253100 Sobic002G333100 Sobic002G333100 Sobic001G463500--Sobic002G333100 Sobic003G071600--Sobic001G296400 Sobic009G083300 Sobic009G083300 Sobic003G071600--Sobic009G083300 Sobic003G071600--Sobic002G064400 Sobic008G008500 Sobic008G008500 Sobic003G071600--Sobic008G008500 Sobic003G071600--Sobic003G265500 Sobic003G071600--Sobic004G208600 Sobic005G084000 Sobic005G084000 Sobic003G071600--Sobic005G084000 Sobic003G071600--Sobic001G543700 Sobic003G071600--Sobic004G015700 Sobic001G063800--Sobic004G175600 Sobic008G011300 Sobic008G011300 Sobic001G063800--Sobic008G011300 Sobic003G218801 Sobic003G218801 Sobic001G063800--Sobic003G218801 Sobic001G063800--Sobic001G296400 Sobic010G204900 Sobic010G204900 Sobic001G063800--Sobic010G204900 Sobic001G250700 Sobic001G250700 Sobic001G063800--Sobic001G250700 Sobic001G063800--Sobic003G265500 Sobic001G032200 Sobic001G032200 Sobic001G063800--Sobic001G032200 Sobic002G072300 Sobic002G072300 Sobic001G063800--Sobic002G072300 Sobic002G201000 Sobic002G201000 Sobic006G037300--Sobic002G201000 Sobic005G030400 Sobic005G030400 Sobic006G037300--Sobic005G030400 Sobic009G034500 Sobic009G034500 Sobic006G037300--Sobic009G034500 Sobic001G130700 Sobic001G130700 Sobic006G037300--Sobic001G130700 Sobic003G022200 Sobic003G022200 Sobic006G037300--Sobic003G022200 Sobic001G482300 Sobic001G482300 Sobic006G037300--Sobic001G482300 Sobic006G037300--Sobic001G306700 Sobic007G000400 Sobic007G000400 Sobic006G037300--Sobic007G000400 Sobic006G003951 Sobic006G003951 Sobic006G037300--Sobic006G003951 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic003G420900--Sobic001G543700 Sobic002G064400--Sobic008G008500 Sobic002G190100 Sobic002G190100 Sobic002G064400--Sobic002G190100 Sobic001G215300 Sobic001G215300 Sobic002G064400--Sobic001G215300 Sobic001G236800 Sobic001G236800 Sobic002G064400--Sobic001G236800 Sobic002G064400--Sobic009G083300 Sobic007G206100 Sobic007G206100 Sobic002G064400--Sobic007G206100 Sobic002G242600 Sobic002G242600 Sobic002G064400--Sobic002G242600 Sobic001G142400 Sobic001G142400 Sobic002G064400--Sobic001G142400 Sobic002G064400--Sobic004G015700
Octagon: transcription factors


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