Gene annotation
Transcriptome id Sobic.001G448700.1
Synonym Sb01g042180
Functional annotation "TUD1(Ortholog in rice:Hu et al., 2013)" (PubMedID : 31659845)
U-box domain containing protein, expressed
UniProt C5WRS8
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G49810 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os03g13010.1 : U-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052987 , Zm00025a001403
Brachypodium KQK22766
Barley HORVU4Hr1G066070.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G448700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G047300 Minichromosome maintenance (MCM2/3/5) family protein("PubMedID : 26759170,PubMedID : 24597475")@EMB1688, putative, expressed K06949: rsgA, ribosome biogenesis GTPase / thiamine phosphate phosphatase
2 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
3 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
4 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
5 Sobic.003G209300 - -
6 Sobic.009G105200 PPR repeat containing protein, expressed -
7 Sobic.003G210900 protein kinase, putative, expressed -
8 Sobic.009G004800 - -
9 Sobic.006G223300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
10 Sobic.007G132500 F-box domain containing protein, expressed -
11 Sobic.003G267500 expressed protein -
12 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
13 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
14 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
15 Sobic.006G080000 protein of unknown function domain containing protein, expressed K14525: ribonucleases P/MRP protein subunit RPP25
16 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
17 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
19 Sobic.001G460200 PPR repeat domain containing protein, putative, expressed -
20 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G448700 Sobic001G448700 Sobic006G047300 Sobic006G047300 Sobic001G448700--Sobic006G047300 Sobic001G161400 Sobic001G161400 Sobic001G448700--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic001G448700--Sobic001G202500 Sobic004G301200 Sobic004G301200 Sobic001G448700--Sobic004G301200 Sobic003G209300 Sobic003G209300 Sobic001G448700--Sobic003G209300 Sobic009G105200 Sobic009G105200 Sobic001G448700--Sobic009G105200 Sobic003G210900 Sobic003G210900 Sobic001G448700--Sobic003G210900 Sobic009G004800 Sobic009G004800 Sobic001G448700--Sobic009G004800 Sobic006G223300 Sobic006G223300 Sobic001G448700--Sobic006G223300 Sobic004G040600 Sobic004G040600 Sobic006G047300--Sobic004G040600 Sobic006G091300 Sobic006G091300 Sobic006G047300--Sobic006G091300 Sobic001G460200 Sobic001G460200 Sobic006G047300--Sobic001G460200 Sobic004G015700 Sobic004G015700 Sobic006G047300--Sobic004G015700 Sobic003G225100 Sobic003G225100 Sobic006G047300--Sobic003G225100 Sobic006G111600 Sobic006G111600 Sobic006G047300--Sobic006G111600 Sobic003G267500 Sobic003G267500 Sobic006G047300--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic006G047300--Sobic007G015300 Sobic003G265500 Sobic003G265500 Sobic006G047300--Sobic003G265500 Sobic006G237100 Sobic006G237100 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic006G204100 Sobic006G204100 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic002G404900 Sobic002G404900 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic009G234200 Sobic009G234200 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic004G297500 Sobic004G297500 Sobic001G202500--Sobic004G297500 Sobic001G202500--Sobic001G161400 Sobic009G029700 Sobic009G029700 Sobic001G202500--Sobic009G029700 Sobic001G341800 Sobic001G341800 Sobic001G202500--Sobic001G341800 Sobic003G283800 Sobic003G283800 Sobic001G202500--Sobic003G283800 Sobic003G310100 Sobic003G310100 Sobic001G202500--Sobic003G310100 Sobic001G437200 Sobic001G437200 Sobic001G202500--Sobic001G437200 Sobic002G404200 Sobic002G404200 Sobic001G202500--Sobic002G404200 Sobic004G268100 Sobic004G268100 Sobic001G202500--Sobic004G268100 Sobic007G208300 Sobic007G208300 Sobic004G301200--Sobic007G208300 Sobic004G301200--Sobic006G091300 Sobic004G055500 Sobic004G055500 Sobic004G301200--Sobic004G055500 Sobic004G144400 Sobic004G144400 Sobic004G301200--Sobic004G144400 Sobic003G085000 Sobic003G085000 Sobic004G301200--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic004G301200--Sobic001G424300 Sobic002G424100 Sobic002G424100 Sobic004G301200--Sobic002G424100 Sobic003G162900 Sobic003G162900 Sobic004G301200--Sobic003G162900 Sobic004G301200--Sobic003G267500 Sobic003G209300--Sobic001G448700 Sobic002G145500 Sobic002G145500 Sobic003G209300--Sobic002G145500 Sobic006G274866 Sobic006G274866 Sobic003G209300--Sobic006G274866 Sobic009G210100 Sobic009G210100 Sobic003G209300--Sobic009G210100 Sobic004G032100 Sobic004G032100 Sobic003G209300--Sobic004G032100 Sobic007G142300 Sobic007G142300 Sobic003G209300--Sobic007G142300 Sobic004G340000 Sobic004G340000 Sobic003G209300--Sobic004G340000 Sobic002G142500 Sobic002G142500 Sobic003G209300--Sobic002G142500 Sobic010G165100 Sobic010G165100 Sobic003G209300--Sobic010G165100 Sobic010G228700 Sobic010G228700 Sobic009G105200--Sobic010G228700 Sobic001G544500 Sobic001G544500 Sobic009G105200--Sobic001G544500 Sobic007G000300 Sobic007G000300 Sobic009G105200--Sobic007G000300 Sobic009G005400 Sobic009G005400 Sobic009G105200--Sobic009G005400 Sobic006G275000 Sobic006G275000 Sobic009G105200--Sobic006G275000 Sobic002G052400 Sobic002G052400 Sobic009G105200--Sobic002G052400 Sobic007G225000 Sobic007G225000 Sobic009G105200--Sobic007G225000 Sobic010G100800 Sobic010G100800 Sobic009G105200--Sobic010G100800 Sobic001G261900 Sobic001G261900 Sobic009G105200--Sobic001G261900 Sobic001G540800 Sobic001G540800 Sobic003G210900--Sobic001G540800 Sobic004G182900 Sobic004G182900 Sobic003G210900--Sobic004G182900 Sobic002G083900 Sobic002G083900 Sobic003G210900--Sobic002G083900 Sobic006G181000 Sobic006G181000 Sobic003G210900--Sobic006G181000 Sobic008G088842 Sobic008G088842 Sobic003G210900--Sobic008G088842 Sobic010G145800 Sobic010G145800 Sobic003G210900--Sobic010G145800 Sobic002G218500 Sobic002G218500 Sobic003G210900--Sobic002G218500 Sobic002G145000 Sobic002G145000 Sobic003G210900--Sobic002G145000 Sobic001G002600 Sobic001G002600 Sobic003G210900--Sobic001G002600 Sobic002G163700 Sobic002G163700 Sobic009G004800--Sobic002G163700 Sobic009G036300 Sobic009G036300 Sobic009G004800--Sobic009G036300 Sobic009G004800--Sobic003G330100 Sobic001G388400 Sobic001G388400 Sobic009G004800--Sobic001G388400 Sobic009G004800--Sobic003G310100 Sobic010G028000 Sobic010G028000 Sobic009G004800--Sobic010G028000 Sobic009G046800 Sobic009G046800 Sobic009G004800--Sobic009G046800 Sobic009G004800--Sobic009G234200 Sobic001G450600 Sobic001G450600 Sobic009G004800--Sobic001G450600 Sobic007G065300 Sobic007G065300 Sobic006G223300--Sobic007G065300 Sobic008G038200 Sobic008G038200 Sobic006G223300--Sobic008G038200 Sobic002G425200 Sobic002G425200 Sobic006G223300--Sobic002G425200 Sobic006G223300--Sobic001G448700 Sobic003G096300 Sobic003G096300 Sobic006G223300--Sobic003G096300 Sobic003G177000 Sobic003G177000 Sobic006G223300--Sobic003G177000 Sobic003G341700 Sobic003G341700 Sobic006G223300--Sobic003G341700 Sobic002G082100 Sobic002G082100 Sobic006G223300--Sobic002G082100 Sobic002G098500 Sobic002G098500 Sobic006G223300--Sobic002G098500
Octagon: transcription factors


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