Gene annotation
Transcriptome id Sobic.003G209300.1
Synonym
Functional annotation -
UniProt A0A1B6Q4H4
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
2 Sobic.002G145500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
3 Sobic.006G274866 - -
4 Sobic.009G210100 EMB1796, putative, expressed -
5 Sobic.004G032100 expressed protein -
6 Sobic.007G142300 expressed protein -
7 Sobic.004G340000 expressed protein -
8 Sobic.002G142500 expressed protein -
9 Sobic.010G165100 expressed protein -
10 Sobic.010G134500 exonuclease, putative, expressed -
11 Sobic.009G161100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.005G227000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic protease, putative, expressed -
13 Sobic.001G389600 expressed protein -
14 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
15 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
17 Sobic.003G299700 TCP4(PubMedID : 24676859)@CIN-like (ClassII) Subclade 16 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@slTCP3, putative, expressed -
18 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
19 Sobic.003G229700 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
20 Sobic.003G267500 expressed protein -


Gene co-expression network
sample Sobic003G209300 Sobic003G209300 Sobic001G448700 Sobic001G448700 Sobic003G209300--Sobic001G448700 Sobic002G145500 Sobic002G145500 Sobic003G209300--Sobic002G145500 Sobic006G274866 Sobic006G274866 Sobic003G209300--Sobic006G274866 Sobic009G210100 Sobic009G210100 Sobic003G209300--Sobic009G210100 Sobic004G032100 Sobic004G032100 Sobic003G209300--Sobic004G032100 Sobic007G142300 Sobic007G142300 Sobic003G209300--Sobic007G142300 Sobic004G340000 Sobic004G340000 Sobic003G209300--Sobic004G340000 Sobic002G142500 Sobic002G142500 Sobic003G209300--Sobic002G142500 Sobic010G165100 Sobic010G165100 Sobic003G209300--Sobic010G165100 Sobic006G047300 Sobic006G047300 Sobic001G448700--Sobic006G047300 Sobic001G161400 Sobic001G161400 Sobic001G448700--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic001G448700--Sobic001G202500 Sobic004G301200 Sobic004G301200 Sobic001G448700--Sobic004G301200 Sobic001G448700--Sobic003G209300 Sobic009G105200 Sobic009G105200 Sobic001G448700--Sobic009G105200 Sobic003G210900 Sobic003G210900 Sobic001G448700--Sobic003G210900 Sobic009G004800 Sobic009G004800 Sobic001G448700--Sobic009G004800 Sobic006G223300 Sobic006G223300 Sobic001G448700--Sobic006G223300 Sobic002G360200 Sobic002G360200 Sobic002G145500--Sobic002G360200 Sobic009G161100 Sobic009G161100 Sobic002G145500--Sobic009G161100 Sobic004G250200 Sobic004G250200 Sobic002G145500--Sobic004G250200 Sobic001G148200 Sobic001G148200 Sobic002G145500--Sobic001G148200 Sobic009G206000 Sobic009G206000 Sobic002G145500--Sobic009G206000 Sobic006G238100 Sobic006G238100 Sobic002G145500--Sobic006G238100 Sobic002G145500--Sobic003G209300 Sobic007G034500 Sobic007G034500 Sobic002G145500--Sobic007G034500 Sobic003G191000 Sobic003G191000 Sobic002G145500--Sobic003G191000 Sobic006G274866--Sobic002G142500 Sobic006G274866--Sobic010G165100 Sobic001G389600 Sobic001G389600 Sobic006G274866--Sobic001G389600 Sobic002G311000 Sobic002G311000 Sobic006G274866--Sobic002G311000 Sobic003G277200 Sobic003G277200 Sobic006G274866--Sobic003G277200 Sobic002G045200 Sobic002G045200 Sobic006G274866--Sobic002G045200 Sobic006G257200 Sobic006G257200 Sobic006G274866--Sobic006G257200 Sobic002G246000 Sobic002G246000 Sobic006G274866--Sobic002G246000 Sobic002G001100 Sobic002G001100 Sobic006G274866--Sobic002G001100 Sobic010G134500 Sobic010G134500 Sobic009G210100--Sobic010G134500 Sobic009G210100--Sobic009G161100 Sobic005G022000 Sobic005G022000 Sobic009G210100--Sobic005G022000 Sobic001G472000 Sobic001G472000 Sobic009G210100--Sobic001G472000 Sobic009G093900 Sobic009G093900 Sobic009G210100--Sobic009G093900 Sobic010G011200 Sobic010G011200 Sobic009G210100--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic009G210100--Sobic002G013700 Sobic002G225000 Sobic002G225000 Sobic009G210100--Sobic002G225000 Sobic009G210100--Sobic002G360200 Sobic009G005400 Sobic009G005400 Sobic004G032100--Sobic009G005400 Sobic002G305100 Sobic002G305100 Sobic004G032100--Sobic002G305100 Sobic009G124000 Sobic009G124000 Sobic004G032100--Sobic009G124000 Sobic009G045900 Sobic009G045900 Sobic004G032100--Sobic009G045900 Sobic006G208400 Sobic006G208400 Sobic004G032100--Sobic006G208400 Sobic008G157200 Sobic008G157200 Sobic004G032100--Sobic008G157200 Sobic006G275000 Sobic006G275000 Sobic004G032100--Sobic006G275000 Sobic010G059200 Sobic010G059200 Sobic004G032100--Sobic010G059200 Sobic004G032100--Sobic010G134500 Sobic005G147800 Sobic005G147800 Sobic007G142300--Sobic005G147800 Sobic010G107200 Sobic010G107200 Sobic007G142300--Sobic010G107200 Sobic002G397400 Sobic002G397400 Sobic007G142300--Sobic002G397400 Sobic005G209900 Sobic005G209900 Sobic007G142300--Sobic005G209900 Sobic001G265900 Sobic001G265900 Sobic007G142300--Sobic001G265900 Sobic005G196500 Sobic005G196500 Sobic007G142300--Sobic005G196500 Sobic006G233600 Sobic006G233600 Sobic007G142300--Sobic006G233600 Sobic010G124200 Sobic010G124200 Sobic007G142300--Sobic010G124200 Sobic006G032800 Sobic006G032800 Sobic007G142300--Sobic006G032800 Sobic001G488400 Sobic001G488400 Sobic004G340000--Sobic001G488400 Sobic005G188500 Sobic005G188500 Sobic004G340000--Sobic005G188500 Sobic007G012800 Sobic007G012800 Sobic004G340000--Sobic007G012800 Sobic006G044200 Sobic006G044200 Sobic004G340000--Sobic006G044200 Sobic010G027700 Sobic010G027700 Sobic004G340000--Sobic010G027700 Sobic008G035400 Sobic008G035400 Sobic004G340000--Sobic008G035400 Sobic002G068400 Sobic002G068400 Sobic004G340000--Sobic002G068400 Sobic004G340000--Sobic010G107200 Sobic002G382500 Sobic002G382500 Sobic004G340000--Sobic002G382500 Sobic002G142500--Sobic006G274866 Sobic002G142500--Sobic006G257200 Sobic002G142500--Sobic001G389600 Sobic002G142500--Sobic010G165100 Sobic002G142500--Sobic002G311000 Sobic009G235700 Sobic009G235700 Sobic002G142500--Sobic009G235700 Sobic002G142500--Sobic002G045200 Sobic002G142500--Sobic002G246000 Sobic006G241800 Sobic006G241800 Sobic002G142500--Sobic006G241800 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic010G165100--Sobic006G274866 Sobic002G403000 Sobic002G403000 Sobic010G165100--Sobic002G403000 Sobic010G165100--Sobic006G032800 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800
Octagon: transcription factors


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