Gene annotation
Transcriptome id Sobic.010G134500.1
Synonym
Functional annotation exonuclease, putative, expressed
UniProt C5Z1R9
Pfam PF00929
Panther DB PTHR23044
NCBI CDD KOG0542; Predicted exonuclease
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15140 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os06g24594.5 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a042812
Brachypodium KQJ96359 , KQJ96358 , PNT67210 , KQJ96357
Barley HORVU7Hr1G083480.8 , HORVU7Hr1G083480.4 , HORVU7Hr1G083480.5 , HORVU7Hr1G083480.6 , HORVU7Hr1G083480.7 , HORVU7Hr1G083480.1 , HORVU7Hr1G083480.2 , HORVU7Hr1G083480.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G210100 EMB1796, putative, expressed -
2 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
3 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
4 Sobic.007G070000 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
5 Sobic.003G267500 expressed protein -
6 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
7 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
8 Sobic.002G363500 RNA methyltransferase, TrmH family protein, putative, expressed -
9 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
10 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
11 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
12 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
13 Sobic.002G305100 mTERF domain containing protein, expressed -
14 Sobic.003G383500 rhodanese-like, putative, expressed -
15 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
16 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
17 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.009G201900 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
19 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
20 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -


Gene co-expression network
sample Sobic010G134500 Sobic010G134500 Sobic009G210100 Sobic009G210100 Sobic010G134500--Sobic009G210100 Sobic001G104300 Sobic001G104300 Sobic010G134500--Sobic001G104300 Sobic002G078000 Sobic002G078000 Sobic010G134500--Sobic002G078000 Sobic007G070000 Sobic007G070000 Sobic010G134500--Sobic007G070000 Sobic003G267500 Sobic003G267500 Sobic010G134500--Sobic003G267500 Sobic003G420900 Sobic003G420900 Sobic010G134500--Sobic003G420900 Sobic005G022000 Sobic005G022000 Sobic010G134500--Sobic005G022000 Sobic002G363500 Sobic002G363500 Sobic010G134500--Sobic002G363500 Sobic001G161400 Sobic001G161400 Sobic010G134500--Sobic001G161400 Sobic009G210100--Sobic010G134500 Sobic009G161100 Sobic009G161100 Sobic009G210100--Sobic009G161100 Sobic009G210100--Sobic005G022000 Sobic001G472000 Sobic001G472000 Sobic009G210100--Sobic001G472000 Sobic009G093900 Sobic009G093900 Sobic009G210100--Sobic009G093900 Sobic010G011200 Sobic010G011200 Sobic009G210100--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic009G210100--Sobic002G013700 Sobic002G225000 Sobic002G225000 Sobic009G210100--Sobic002G225000 Sobic002G360200 Sobic002G360200 Sobic009G210100--Sobic002G360200 Sobic001G104300--Sobic002G078000 Sobic006G281066 Sobic006G281066 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic001G104300--Sobic003G333700 Sobic001G104300--Sobic010G134500 Sobic004G109000 Sobic004G109000 Sobic001G104300--Sobic004G109000 Sobic002G078000--Sobic001G013900 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic002G078000--Sobic005G022000 Sobic003G223000 Sobic003G223000 Sobic002G078000--Sobic003G223000 Sobic002G078000--Sobic002G360200 Sobic001G188600 Sobic001G188600 Sobic002G078000--Sobic001G188600 Sobic010G012900 Sobic010G012900 Sobic002G078000--Sobic010G012900 Sobic002G078000--Sobic004G109000 Sobic003G311600 Sobic003G311600 Sobic007G070000--Sobic003G311600 Sobic002G340200 Sobic002G340200 Sobic007G070000--Sobic002G340200 Sobic007G070000--Sobic010G134500 Sobic008G088842 Sobic008G088842 Sobic007G070000--Sobic008G088842 Sobic007G070000--Sobic003G223000 Sobic001G300900 Sobic001G300900 Sobic007G070000--Sobic001G300900 Sobic010G091200 Sobic010G091200 Sobic007G070000--Sobic010G091200 Sobic004G354000 Sobic004G354000 Sobic007G070000--Sobic004G354000 Sobic006G275000 Sobic006G275000 Sobic007G070000--Sobic006G275000 Sobic001G025800 Sobic001G025800 Sobic003G267500--Sobic001G025800 Sobic005G117300 Sobic005G117300 Sobic003G267500--Sobic005G117300 Sobic010G204900 Sobic010G204900 Sobic003G267500--Sobic010G204900 Sobic006G047300 Sobic006G047300 Sobic003G267500--Sobic006G047300 Sobic004G301200 Sobic004G301200 Sobic003G267500--Sobic004G301200 Sobic009G005400 Sobic009G005400 Sobic003G267500--Sobic009G005400 Sobic003G267500--Sobic002G013700 Sobic003G267500--Sobic010G134500 Sobic007G090537 Sobic007G090537 Sobic003G267500--Sobic007G090537 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic003G420900--Sobic004G296800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic001G543700 Sobic001G543700 Sobic003G420900--Sobic001G543700 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic005G022000--Sobic002G363500 Sobic005G022000--Sobic006G281066 Sobic006G114300 Sobic006G114300 Sobic005G022000--Sobic006G114300 Sobic007G026200 Sobic007G026200 Sobic005G022000--Sobic007G026200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic002G363500--Sobic006G281066 Sobic002G363500--Sobic005G022000 Sobic001G395300 Sobic001G395300 Sobic002G363500--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G363500--Sobic001G437200 Sobic002G363500--Sobic001G104300 Sobic003G298400 Sobic003G298400 Sobic002G363500--Sobic003G298400 Sobic002G363500--Sobic010G134500 Sobic002G363500--Sobic003G165800 Sobic006G237100 Sobic006G237100 Sobic002G363500--Sobic006G237100 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic006G204100 Sobic006G204100 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic002G404900 Sobic002G404900 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic009G234200 Sobic009G234200 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300
Octagon: transcription factors


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