Gene annotation
Transcriptome id Sobic.002G305100.1
Synonym Sb02g033550
Functional annotation mTERF domain containing protein, expressed
UniProt C5X959
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT3G60400 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os07g22670.1 : mTERF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048079
Brachypodium -
Barley HORVU0Hr1G016840.3 , HORVU0Hr1G016840.2 , HORVU0Hr1G016840.5 , HORVU0Hr1G016840.4 , HORVU0Hr1G016840.7 , HORVU0Hr1G016840.6 , HORVU0Hr1G016840.8 , HORVU0Hr1G016840.20 , HORVU0Hr1G016840.21 , HORVU0Hr1G016840.22 , HORVU0Hr1G016840.24 , HORVU0Hr1G016840.26 , HORVU0Hr1G016840.27 , HORVU0Hr1G016840.28 , HORVU0Hr1G016840.29 , HORVU6Hr1G068630.11 , HORVU6Hr1G068630.12 , HORVU0Hr1G016840.15 , HORVU0Hr1G016840.14 , HORVU0Hr1G016840.17 , HORVU0Hr1G016840.16 , HORVU0Hr1G016840.11 , HORVU0Hr1G016840.10 , HORVU0Hr1G016840.13 , HORVU0Hr1G016840.12 , HORVU0Hr1G016840.19 , HORVU0Hr1G016840.18 , HORVU0Hr1G016840.25 , HORVU0Hr1G016840.37 , HORVU0Hr1G016840.34 , HORVU0Hr1G016840.1 , HORVU0Hr1G016840.9 , HORVU6Hr1G068630.9 , HORVU6Hr1G068630.8 , HORVU6Hr1G068630.2 , HORVU6Hr1G068630.5 , HORVU6Hr1G068630.4 , HORVU6Hr1G068630.7 , HORVU6Hr1G068630.6 , HORVU0Hr1G016840.33 , HORVU0Hr1G016840.32 , HORVU0Hr1G016840.31 , HORVU0Hr1G016840.30 , HORVU0Hr1G016840.36 , HORVU0Hr1G016840.35 , HORVU0Hr1G016840.39 , HORVU0Hr1G016840.38 , HORVU0Hr1G016840.44 , HORVU0Hr1G016840.45 , HORVU0Hr1G016840.42 , HORVU0Hr1G016840.43 , HORVU0Hr1G016840.40 , HORVU0Hr1G016840.41
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
2 Sobic.003G399100 pentatricopeptide, putative, expressed -
3 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
4 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.001G025800 pentatricopeptide, putative, expressed -
6 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
7 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
8 Sobic.004G032100 expressed protein -
9 Sobic.007G015300 calreticulin family protein, expressed -
10 Sobic.010G134500 exonuclease, putative, expressed -
11 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
12 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
13 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
15 Sobic.004G282000 pentatricopeptide, putative, expressed -
16 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
17 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
18 Sobic.003G345900 histone deacetylase, putative, expressed -
19 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase


Gene co-expression network
sample Sobic002G305100 Sobic002G305100 Sobic008G038600 Sobic008G038600 Sobic002G305100--Sobic008G038600 Sobic003G399100 Sobic003G399100 Sobic002G305100--Sobic003G399100 Sobic001G448600 Sobic001G448600 Sobic002G305100--Sobic001G448600 Sobic009G005400 Sobic009G005400 Sobic002G305100--Sobic009G005400 Sobic001G025800 Sobic001G025800 Sobic002G305100--Sobic001G025800 Sobic004G003900 Sobic004G003900 Sobic002G305100--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G305100--Sobic001G375000 Sobic004G032100 Sobic004G032100 Sobic002G305100--Sobic004G032100 Sobic007G015300 Sobic007G015300 Sobic002G305100--Sobic007G015300 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic008G038600--Sobic003G399100 Sobic003G399100--Sobic008G038600 Sobic004G354000 Sobic004G354000 Sobic003G399100--Sobic004G354000 Sobic003G399100--Sobic009G005400 Sobic003G399100--Sobic002G305100 Sobic003G399100--Sobic007G132200 Sobic003G267500 Sobic003G267500 Sobic003G399100--Sobic003G267500 Sobic003G399100--Sobic006G128400 Sobic008G017100 Sobic008G017100 Sobic003G399100--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic003G399100--Sobic010G224700 Sobic001G448600--Sobic001G375000 Sobic004G255500 Sobic004G255500 Sobic001G448600--Sobic004G255500 Sobic002G140000 Sobic002G140000 Sobic001G448600--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic001G448600--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic001G448600--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic001G448600--Sobic009G104700 Sobic001G448600--Sobic007G015300 Sobic003G128400 Sobic003G128400 Sobic001G448600--Sobic003G128400 Sobic010G027200 Sobic010G027200 Sobic001G448600--Sobic010G027200 Sobic009G005400--Sobic001G025800 Sobic010G100800 Sobic010G100800 Sobic009G005400--Sobic010G100800 Sobic009G005400--Sobic003G267500 Sobic010G204900 Sobic010G204900 Sobic009G005400--Sobic010G204900 Sobic004G144400 Sobic004G144400 Sobic009G005400--Sobic004G144400 Sobic009G005400--Sobic008G038600 Sobic009G105200 Sobic009G105200 Sobic009G005400--Sobic009G105200 Sobic006G275000 Sobic006G275000 Sobic009G005400--Sobic006G275000 Sobic008G157200 Sobic008G157200 Sobic009G005400--Sobic008G157200 Sobic001G025800--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic001G025800--Sobic005G117300 Sobic001G495200 Sobic001G495200 Sobic001G025800--Sobic001G495200 Sobic002G048200 Sobic002G048200 Sobic001G025800--Sobic002G048200 Sobic009G251000 Sobic009G251000 Sobic001G025800--Sobic009G251000 Sobic001G513800 Sobic001G513800 Sobic001G025800--Sobic001G513800 Sobic001G025800--Sobic003G267500 Sobic001G025800--Sobic007G015300 Sobic009G092900 Sobic009G092900 Sobic001G025800--Sobic009G092900 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic003G162800 Sobic003G162800 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic004G032100--Sobic009G005400 Sobic004G032100--Sobic002G305100 Sobic009G124000 Sobic009G124000 Sobic004G032100--Sobic009G124000 Sobic009G045900 Sobic009G045900 Sobic004G032100--Sobic009G045900 Sobic006G208400 Sobic006G208400 Sobic004G032100--Sobic006G208400 Sobic004G032100--Sobic008G157200 Sobic004G032100--Sobic006G275000 Sobic010G059200 Sobic010G059200 Sobic004G032100--Sobic010G059200 Sobic010G134500 Sobic010G134500 Sobic004G032100--Sobic010G134500 Sobic001G099000 Sobic001G099000 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400
Octagon: transcription factors


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