Gene annotation
Transcriptome id Sobic.004G282000.1
Synonym Sb04g031840, CRR22
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Y0Y8
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF638
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11290 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g08650.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a053126 , Zm00025a053125
Brachypodium KQK00776
Barley HORVU6Hr1G065970.1 , HORVU0Hr1G023470.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
2 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
3 Sobic.002G305100 mTERF domain containing protein, expressed -
4 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
5 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
6 Sobic.010G134500 exonuclease, putative, expressed -
7 Sobic.007G015300 calreticulin family protein, expressed -
8 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.001G025800 pentatricopeptide, putative, expressed -
11 Sobic.003G399100 pentatricopeptide, putative, expressed -
12 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
13 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
14 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
15 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
17 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
18 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic004G282000 Sobic004G282000 Sobic001G161400 Sobic001G161400 Sobic004G282000--Sobic001G161400 Sobic004G338300 Sobic004G338300 Sobic004G282000--Sobic004G338300 Sobic002G305100 Sobic002G305100 Sobic004G282000--Sobic002G305100 Sobic001G013900 Sobic001G013900 Sobic004G282000--Sobic001G013900 Sobic006G237100 Sobic006G237100 Sobic004G282000--Sobic006G237100 Sobic010G134500 Sobic010G134500 Sobic004G282000--Sobic010G134500 Sobic007G015300 Sobic007G015300 Sobic004G282000--Sobic007G015300 Sobic010G027200 Sobic010G027200 Sobic004G282000--Sobic010G027200 Sobic001G395300 Sobic001G395300 Sobic004G282000--Sobic001G395300 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic006G204100 Sobic006G204100 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic002G404900 Sobic002G404900 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic009G234200 Sobic009G234200 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic002G158800 Sobic002G158800 Sobic004G338300--Sobic002G158800 Sobic004G338300--Sobic007G015300 Sobic001G099000 Sobic001G099000 Sobic004G338300--Sobic001G099000 Sobic004G338300--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic009G104700 Sobic009G104700 Sobic004G338300--Sobic009G104700 Sobic010G011200 Sobic010G011200 Sobic004G338300--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic004G338300--Sobic002G013700 Sobic008G038600 Sobic008G038600 Sobic002G305100--Sobic008G038600 Sobic003G399100 Sobic003G399100 Sobic002G305100--Sobic003G399100 Sobic001G448600 Sobic001G448600 Sobic002G305100--Sobic001G448600 Sobic009G005400 Sobic009G005400 Sobic002G305100--Sobic009G005400 Sobic001G025800 Sobic001G025800 Sobic002G305100--Sobic001G025800 Sobic004G003900 Sobic004G003900 Sobic002G305100--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G305100--Sobic001G375000 Sobic004G032100 Sobic004G032100 Sobic002G305100--Sobic004G032100 Sobic002G305100--Sobic007G015300 Sobic002G360200 Sobic002G360200 Sobic001G013900--Sobic002G360200 Sobic002G078000 Sobic002G078000 Sobic001G013900--Sobic002G078000 Sobic003G333700 Sobic003G333700 Sobic001G013900--Sobic003G333700 Sobic002G272400 Sobic002G272400 Sobic001G013900--Sobic002G272400 Sobic001G104300 Sobic001G104300 Sobic001G013900--Sobic001G104300 Sobic001G188600 Sobic001G188600 Sobic001G013900--Sobic001G188600 Sobic001G172300 Sobic001G172300 Sobic001G013900--Sobic001G172300 Sobic001G013900--Sobic004G338300 Sobic008G058000 Sobic008G058000 Sobic001G013900--Sobic008G058000 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic009G210100 Sobic009G210100 Sobic010G134500--Sobic009G210100 Sobic010G134500--Sobic001G104300 Sobic010G134500--Sobic002G078000 Sobic007G070000 Sobic007G070000 Sobic010G134500--Sobic007G070000 Sobic003G267500 Sobic003G267500 Sobic010G134500--Sobic003G267500 Sobic003G420900 Sobic003G420900 Sobic010G134500--Sobic003G420900 Sobic005G022000 Sobic005G022000 Sobic010G134500--Sobic005G022000 Sobic002G363500 Sobic002G363500 Sobic010G134500--Sobic002G363500 Sobic010G134500--Sobic001G161400 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200
Octagon: transcription factors


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