Gene annotation
Transcriptome id Sobic.001G013900.4,Sobic.001G013900.1,Sobic.001G013900.6,Sobic.001G013900.2,Sobic.001G013900.3,Sobic.001G013900.5,Sobic.001G013900.7
Synonym Sb01g001360
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Ser/Thr protein phosphatase family protein, expressed
UniProt A0A1Z5S4C9 , C5WSY0
Pfam PF00155 PF03711
Panther DB PTHR11751 PTHR11751:SF435
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009058; biosynthetic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g63074.2,LOC_Os03g63074.1 : Ser/Thr protein phosphatase family protein, expressed
MaizeGDB (Corn) Zm00025a052413 , Zm00025a009019
Brachypodium -
Barley -
Wheat TraesCS4A02G337300 , TraesCS4A02G337300 , TraesCS5B02G536900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G013900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
3 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
4 Sobic.002G272400 expressed protein -
5 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
6 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
8 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
9 Sobic.008G058000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynamin family protein, putative, expressed -
10 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
11 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
12 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
13 Sobic.006G114300 pentatricopeptide, putative, expressed -
14 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
16 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
17 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
18 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
19 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
20 Sobic.001G371700 zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic001G013900 Sobic001G013900 Sobic002G360200 Sobic002G360200 Sobic001G013900--Sobic002G360200 Sobic002G078000 Sobic002G078000 Sobic001G013900--Sobic002G078000 Sobic003G333700 Sobic003G333700 Sobic001G013900--Sobic003G333700 Sobic002G272400 Sobic002G272400 Sobic001G013900--Sobic002G272400 Sobic001G104300 Sobic001G104300 Sobic001G013900--Sobic001G104300 Sobic001G188600 Sobic001G188600 Sobic001G013900--Sobic001G188600 Sobic001G172300 Sobic001G172300 Sobic001G013900--Sobic001G172300 Sobic004G338300 Sobic004G338300 Sobic001G013900--Sobic004G338300 Sobic008G058000 Sobic008G058000 Sobic001G013900--Sobic008G058000 Sobic002G360200--Sobic001G172300 Sobic010G012900 Sobic010G012900 Sobic002G360200--Sobic010G012900 Sobic002G360200--Sobic001G013900 Sobic004G253800 Sobic004G253800 Sobic002G360200--Sobic004G253800 Sobic002G360200--Sobic001G188600 Sobic010G011200 Sobic010G011200 Sobic002G360200--Sobic010G011200 Sobic006G114300 Sobic006G114300 Sobic002G360200--Sobic006G114300 Sobic002G360200--Sobic002G078000 Sobic001G357200 Sobic001G357200 Sobic002G360200--Sobic001G357200 Sobic002G078000--Sobic001G013900 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic002G078000--Sobic005G022000 Sobic003G223000 Sobic003G223000 Sobic002G078000--Sobic003G223000 Sobic002G078000--Sobic002G360200 Sobic002G078000--Sobic001G188600 Sobic002G078000--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic002G078000--Sobic004G109000 Sobic003G333700--Sobic002G078000 Sobic003G333700--Sobic003G223000 Sobic003G333700--Sobic001G013900 Sobic003G333700--Sobic001G104300 Sobic003G333700--Sobic004G109000 Sobic001G164500 Sobic001G164500 Sobic003G333700--Sobic001G164500 Sobic001G165801 Sobic001G165801 Sobic003G333700--Sobic001G165801 Sobic003G333700--Sobic001G188600 Sobic001G379100 Sobic001G379100 Sobic003G333700--Sobic001G379100 Sobic002G141900 Sobic002G141900 Sobic002G272400--Sobic002G141900 Sobic002G272400--Sobic001G013900 Sobic008G101900 Sobic008G101900 Sobic002G272400--Sobic008G101900 Sobic002G272400--Sobic003G223000 Sobic002G272400--Sobic008G058000 Sobic001G371700 Sobic001G371700 Sobic002G272400--Sobic001G371700 Sobic004G119400 Sobic004G119400 Sobic002G272400--Sobic004G119400 Sobic001G315400 Sobic001G315400 Sobic002G272400--Sobic001G315400 Sobic010G157700 Sobic010G157700 Sobic002G272400--Sobic010G157700 Sobic001G104300--Sobic002G078000 Sobic006G281066 Sobic006G281066 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G104300--Sobic001G013900 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic001G104300--Sobic004G109000 Sobic001G069500 Sobic001G069500 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic007G211100 Sobic007G211100 Sobic001G188600--Sobic007G211100 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic001G172300--Sobic010G012900 Sobic001G347800 Sobic001G347800 Sobic001G172300--Sobic001G347800 Sobic003G392000 Sobic003G392000 Sobic001G172300--Sobic003G392000 Sobic001G172300--Sobic001G188600 Sobic002G190800 Sobic002G190800 Sobic001G172300--Sobic002G190800 Sobic001G172300--Sobic006G114300 Sobic001G172300--Sobic002G360200 Sobic001G172300--Sobic001G357200 Sobic001G172300--Sobic004G253800 Sobic002G158800 Sobic002G158800 Sobic004G338300--Sobic002G158800 Sobic007G015300 Sobic007G015300 Sobic004G338300--Sobic007G015300 Sobic001G099000 Sobic001G099000 Sobic004G338300--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic004G338300--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic009G104700 Sobic009G104700 Sobic004G338300--Sobic009G104700 Sobic004G338300--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic004G338300--Sobic002G013700 Sobic008G058000--Sobic008G101900 Sobic008G058000--Sobic001G013900 Sobic008G058000--Sobic002G272400 Sobic008G058000--Sobic001G371700 Sobic008G058000--Sobic003G223000 Sobic010G099300 Sobic010G099300 Sobic008G058000--Sobic010G099300 Sobic008G058000--Sobic002G078000 Sobic006G193500 Sobic006G193500 Sobic008G058000--Sobic006G193500 Sobic008G125100 Sobic008G125100 Sobic008G058000--Sobic008G125100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.