Gene annotation
Transcriptome id Sobic.003G399100.1
Synonym DOT4
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q7T4
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF389
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18750 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g68524.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a039368
Brachypodium KQK11160
Barley HORVU3Hr1G092880.9 , HORVU3Hr1G092880.3 , HORVU3Hr1G092880.1 , HORVU3Hr1G092880.10 , HORVU3Hr1G092880.8 , HORVU3Hr1G092880.2 , HORVU3Hr1G092880.6 , HORVU3Hr1G092880.7 , HORVU3Hr1G092880.4 , HORVU3Hr1G092880.5
Wheat TraesCS3A02G418890 , TraesCS3B02G454190 , TraesCS3D02G414500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
2 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
3 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.002G305100 mTERF domain containing protein, expressed -
5 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
6 Sobic.003G267500 expressed protein -
7 Sobic.006G128400 PPR repeat containing protein, expressed -
8 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
9 Sobic.010G224700 - K17680: twinkle protein
10 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
11 Sobic.002G317100 PPR repeat containing protein, expressed -
12 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
13 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
14 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
15 Sobic.003G267000 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed -
16 Sobic.007G015300 calreticulin family protein, expressed -
17 Sobic.002G423400 PPR repeat containing protein, expressed -
18 Sobic.004G019500 pentatricopeptide, putative, expressed -
19 Sobic.010G134500 exonuclease, putative, expressed -
20 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4


Gene co-expression network
sample Sobic003G399100 Sobic003G399100 Sobic008G038600 Sobic008G038600 Sobic003G399100--Sobic008G038600 Sobic004G354000 Sobic004G354000 Sobic003G399100--Sobic004G354000 Sobic009G005400 Sobic009G005400 Sobic003G399100--Sobic009G005400 Sobic002G305100 Sobic002G305100 Sobic003G399100--Sobic002G305100 Sobic007G132200 Sobic007G132200 Sobic003G399100--Sobic007G132200 Sobic003G267500 Sobic003G267500 Sobic003G399100--Sobic003G267500 Sobic006G128400 Sobic006G128400 Sobic003G399100--Sobic006G128400 Sobic008G017100 Sobic008G017100 Sobic003G399100--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic003G399100--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic004G003900 Sobic004G003900 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic008G038600--Sobic003G399100 Sobic006G208400 Sobic006G208400 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic001G025800 Sobic001G025800 Sobic009G005400--Sobic001G025800 Sobic010G100800 Sobic010G100800 Sobic009G005400--Sobic010G100800 Sobic009G005400--Sobic003G267500 Sobic010G204900 Sobic010G204900 Sobic009G005400--Sobic010G204900 Sobic004G144400 Sobic004G144400 Sobic009G005400--Sobic004G144400 Sobic009G005400--Sobic008G038600 Sobic009G105200 Sobic009G105200 Sobic009G005400--Sobic009G105200 Sobic006G275000 Sobic006G275000 Sobic009G005400--Sobic006G275000 Sobic008G157200 Sobic008G157200 Sobic009G005400--Sobic008G157200 Sobic002G305100--Sobic008G038600 Sobic002G305100--Sobic003G399100 Sobic001G448600 Sobic001G448600 Sobic002G305100--Sobic001G448600 Sobic002G305100--Sobic009G005400 Sobic002G305100--Sobic001G025800 Sobic002G305100--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G305100--Sobic001G375000 Sobic004G032100 Sobic004G032100 Sobic002G305100--Sobic004G032100 Sobic007G015300 Sobic007G015300 Sobic002G305100--Sobic007G015300 Sobic007G132200--Sobic008G038600 Sobic002G155000 Sobic002G155000 Sobic007G132200--Sobic002G155000 Sobic001G290600 Sobic001G290600 Sobic007G132200--Sobic001G290600 Sobic001G283300 Sobic001G283300 Sobic007G132200--Sobic001G283300 Sobic010G260000 Sobic010G260000 Sobic007G132200--Sobic010G260000 Sobic007G132200--Sobic001G025800 Sobic007G132200--Sobic003G399100 Sobic007G132200--Sobic010G204900 Sobic006G049900 Sobic006G049900 Sobic007G132200--Sobic006G049900 Sobic003G267500--Sobic001G025800 Sobic005G117300 Sobic005G117300 Sobic003G267500--Sobic005G117300 Sobic003G267500--Sobic010G204900 Sobic006G047300 Sobic006G047300 Sobic003G267500--Sobic006G047300 Sobic004G301200 Sobic004G301200 Sobic003G267500--Sobic004G301200 Sobic003G267500--Sobic009G005400 Sobic002G013700 Sobic002G013700 Sobic003G267500--Sobic002G013700 Sobic010G134500 Sobic010G134500 Sobic003G267500--Sobic010G134500 Sobic007G090537 Sobic007G090537 Sobic003G267500--Sobic007G090537 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic006G128400--Sobic010G224700 Sobic006G128400--Sobic002G317100 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic006G269800 Sobic006G269800 Sobic008G017100--Sobic006G269800 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic008G017100--Sobic002G079100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic010G224700--Sobic002G378100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300
Octagon: transcription factors


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