Gene annotation
Transcriptome id Sobic.003G267000.10,Sobic.003G267000.6,Sobic.003G267000.11,Sobic.003G267000.9,Sobic.003G267000.3,Sobic.003G267000.8,Sobic.003G267000.12,Sobic.003G267000.7,Sobic.003G267000.2,Sobic.003G267000.1
Synonym
Functional annotation 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed
UniProt A0A1B6Q5J7 , A0A1B6Q5H9 , A0A1B6Q5I3 , A0A1B6Q5J9
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26115 : Pyridoxal-5\'-phosphate-dependent enzyme family protein
RAP-DB (Rice) LOC_Os01g50060.1 : 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed
MaizeGDB (Corn) Zm00025a027914
Brachypodium KQK09318
Barley HORVU3Hr1G065230.7 , HORVU3Hr1G065230.6 , HORVU3Hr1G065230.5 , HORVU3Hr1G065230.4 , HORVU3Hr1G065230.3 , HORVU3Hr1G065230.2 , HORVU3Hr1G065230.1 , HORVU3Hr1G065230.9 , HORVU3Hr1G065230.19 , HORVU3Hr1G065230.18 , HORVU3Hr1G065230.17 , HORVU3Hr1G065230.16 , HORVU3Hr1G065230.15 , HORVU3Hr1G065230.14 , HORVU3Hr1G065230.13 , HORVU3Hr1G065230.12 , HORVU3Hr1G065230.10 , HORVU3Hr1G065230.31 , HORVU3Hr1G065230.30 , HORVU3Hr1G065230.33 , HORVU3Hr1G065230.35 , HORVU3Hr1G065230.34 , HORVU3Hr1G065230.26 , HORVU3Hr1G065230.27 , HORVU3Hr1G065230.24 , HORVU3Hr1G065230.25 , HORVU3Hr1G065230.22 , HORVU3Hr1G065230.23 , HORVU3Hr1G065230.20 , HORVU3Hr1G065230.21 , HORVU3Hr1G065230.28 , HORVU3Hr1G065230.29
Wheat TraesCS3D02G258400 , TraesCS3D02G258400 , TraesCS3B02G291300 , TraesCS3A02G258500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
2 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
3 Sobic.008G186500 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
4 Sobic.010G157700 expressed protein -
5 Sobic.003G345900 histone deacetylase, putative, expressed -
6 Sobic.010G120300 tm-1GCR237 protein, putative, expressed -
7 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
8 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
9 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
10 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
11 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
12 Sobic.003G399100 pentatricopeptide, putative, expressed -
13 Sobic.001G532700 WD repeat-containing protein 44, putative, expressed -
14 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
15 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.006G281066 - -
17 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
18 Sobic.008G088842 - -
19 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
20 Sobic.001G326300 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G267000 Sobic003G267000 Sobic002G141900 Sobic002G141900 Sobic003G267000--Sobic002G141900 Sobic004G144400 Sobic004G144400 Sobic003G267000--Sobic004G144400 Sobic008G186500 Sobic008G186500 Sobic003G267000--Sobic008G186500 Sobic010G157700 Sobic010G157700 Sobic003G267000--Sobic010G157700 Sobic003G345900 Sobic003G345900 Sobic003G267000--Sobic003G345900 Sobic010G120300 Sobic010G120300 Sobic003G267000--Sobic010G120300 Sobic004G275600 Sobic004G275600 Sobic003G267000--Sobic004G275600 Sobic008G038600 Sobic008G038600 Sobic003G267000--Sobic008G038600 Sobic006G208400 Sobic006G208400 Sobic003G267000--Sobic006G208400 Sobic002G272400 Sobic002G272400 Sobic002G141900--Sobic002G272400 Sobic006G281066 Sobic006G281066 Sobic002G141900--Sobic006G281066 Sobic002G141900--Sobic003G267000 Sobic010G027200 Sobic010G027200 Sobic002G141900--Sobic010G027200 Sobic003G165800 Sobic003G165800 Sobic002G141900--Sobic003G165800 Sobic002G141900--Sobic006G208400 Sobic001G104300 Sobic001G104300 Sobic002G141900--Sobic001G104300 Sobic002G140000 Sobic002G140000 Sobic002G141900--Sobic002G140000 Sobic001G027100 Sobic001G027100 Sobic002G141900--Sobic001G027100 Sobic004G019500 Sobic004G019500 Sobic004G144400--Sobic004G019500 Sobic008G067100 Sobic008G067100 Sobic004G144400--Sobic008G067100 Sobic008G090900 Sobic008G090900 Sobic004G144400--Sobic008G090900 Sobic004G003900 Sobic004G003900 Sobic004G144400--Sobic004G003900 Sobic002G181132 Sobic002G181132 Sobic004G144400--Sobic002G181132 Sobic004G301200 Sobic004G301200 Sobic004G144400--Sobic004G301200 Sobic009G092900 Sobic009G092900 Sobic004G144400--Sobic009G092900 Sobic002G218500 Sobic002G218500 Sobic004G144400--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic004G144400--Sobic009G129100 Sobic008G186500--Sobic010G157700 Sobic008G186500--Sobic003G267000 Sobic008G186500--Sobic002G141900 Sobic008G186500--Sobic003G165800 Sobic003G420900 Sobic003G420900 Sobic008G186500--Sobic003G420900 Sobic004G015700 Sobic004G015700 Sobic008G186500--Sobic004G015700 Sobic008G088842 Sobic008G088842 Sobic008G186500--Sobic008G088842 Sobic010G134500 Sobic010G134500 Sobic008G186500--Sobic010G134500 Sobic001G321400 Sobic001G321400 Sobic008G186500--Sobic001G321400 Sobic009G096100 Sobic009G096100 Sobic010G157700--Sobic009G096100 Sobic001G236800 Sobic001G236800 Sobic010G157700--Sobic001G236800 Sobic008G100400 Sobic008G100400 Sobic010G157700--Sobic008G100400 Sobic010G157700--Sobic008G186500 Sobic007G182600 Sobic007G182600 Sobic010G157700--Sobic007G182600 Sobic002G380100 Sobic002G380100 Sobic010G157700--Sobic002G380100 Sobic007G000400 Sobic007G000400 Sobic010G157700--Sobic007G000400 Sobic010G157700--Sobic003G267000 Sobic010G157700--Sobic001G321400 Sobic003G162800 Sobic003G162800 Sobic003G345900--Sobic003G162800 Sobic003G345900--Sobic004G003900 Sobic003G345900--Sobic002G181132 Sobic001G375000 Sobic001G375000 Sobic003G345900--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic003G345900--Sobic006G088000 Sobic002G156100 Sobic002G156100 Sobic003G345900--Sobic002G156100 Sobic003G345900--Sobic010G027200 Sobic006G217000 Sobic006G217000 Sobic003G345900--Sobic006G217000 Sobic004G263200 Sobic004G263200 Sobic003G345900--Sobic004G263200 Sobic001G073150 Sobic001G073150 Sobic010G120300--Sobic001G073150 Sobic010G090500 Sobic010G090500 Sobic010G120300--Sobic010G090500 Sobic009G251100 Sobic009G251100 Sobic010G120300--Sobic009G251100 Sobic001G159800 Sobic001G159800 Sobic010G120300--Sobic001G159800 Sobic008G174900 Sobic008G174900 Sobic010G120300--Sobic008G174900 Sobic001G131700 Sobic001G131700 Sobic010G120300--Sobic001G131700 Sobic010G120300--Sobic003G267000 Sobic009G125900 Sobic009G125900 Sobic010G120300--Sobic009G125900 Sobic001G021500 Sobic001G021500 Sobic010G120300--Sobic001G021500 Sobic003G309300 Sobic003G309300 Sobic004G275600--Sobic003G309300 Sobic003G165101 Sobic003G165101 Sobic004G275600--Sobic003G165101 Sobic001G537500 Sobic001G537500 Sobic004G275600--Sobic001G537500 Sobic009G124000 Sobic009G124000 Sobic004G275600--Sobic009G124000 Sobic006G073200 Sobic006G073200 Sobic004G275600--Sobic006G073200 Sobic007G071900 Sobic007G071900 Sobic004G275600--Sobic007G071900 Sobic004G275600--Sobic003G420900 Sobic004G275600--Sobic008G067100 Sobic004G257100 Sobic004G257100 Sobic004G275600--Sobic004G257100 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700
Octagon: transcription factors


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