Gene annotation
Transcriptome id Sobic.001G326300.3,Sobic.001G326300.1,Sobic.001G326300.2
Synonym DG1, EMB1408, Sb01g031600, EMB246
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5S8Q1
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF837
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67570 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g25060.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009211
Brachypodium KQK14390 , KQK14387 , KQK14386 , KQK14389 , KQK14388
Barley HORVU3Hr1G024640.24 , HORVU3Hr1G024640.25 , HORVU3Hr1G024640.20 , HORVU3Hr1G024640.22 , HORVU3Hr1G024640.23 , HORVU3Hr1G024640.11 , HORVU3Hr1G024640.10 , HORVU3Hr1G024640.13 , HORVU3Hr1G024640.12 , HORVU3Hr1G024640.15 , HORVU3Hr1G024640.14 , HORVU3Hr1G024640.17 , HORVU3Hr1G024640.16 , HORVU3Hr1G024640.19 , HORVU3Hr1G024640.18 , HORVU3Hr1G024640.5 , HORVU3Hr1G024640.4 , HORVU3Hr1G024640.7 , HORVU3Hr1G024640.6 , HORVU3Hr1G024640.3 , HORVU3Hr1G024640.2 , HORVU3Hr1G024640.9
Wheat TraesCS3B02G149800 , TraesCS3B02G149800 , TraesCS3A02G131000 , TraesCS3A02G131000 , TraesCS3D02G131600 , TraesCS3D02G131600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G019500 pentatricopeptide, putative, expressed -
2 Sobic.001G379200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
3 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
4 Sobic.004G351800 PPR repeat containing protein, expressed -
5 Sobic.002G055300 pentatricopeptide, putative, expressed -
6 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
7 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
8 Sobic.008G092532 - -
9 Sobic.002G181132 - -
10 Sobic.007G210000 ribosomal L18p/L5e family protein, expressed -
11 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
12 Sobic.009G007800 TruB family pseudouridylate synthase, putative, expressed K03177: truB, PUS4, tRNA pseudouridine55 synthase
13 Sobic.004G225600 - -
14 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
15 Sobic.005G001300 expressed protein -
16 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
17 Sobic.006G078600 expressed protein K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
18 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
19 Sobic.004G255500 SET domain-containing protein, putative, expressed -
20 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein


Gene co-expression network
sample Sobic001G326300 Sobic001G326300 Sobic004G019500 Sobic004G019500 Sobic001G326300--Sobic004G019500 Sobic001G379200 Sobic001G379200 Sobic001G326300--Sobic001G379200 Sobic001G022500 Sobic001G022500 Sobic001G326300--Sobic001G022500 Sobic004G351800 Sobic004G351800 Sobic001G326300--Sobic004G351800 Sobic002G055300 Sobic002G055300 Sobic001G326300--Sobic002G055300 Sobic004G144400 Sobic004G144400 Sobic001G326300--Sobic004G144400 Sobic005G197300 Sobic005G197300 Sobic001G326300--Sobic005G197300 Sobic008G092532 Sobic008G092532 Sobic001G326300--Sobic008G092532 Sobic002G181132 Sobic002G181132 Sobic001G326300--Sobic002G181132 Sobic004G019500--Sobic004G144400 Sobic001G540800 Sobic001G540800 Sobic004G019500--Sobic001G540800 Sobic009G214200 Sobic009G214200 Sobic004G019500--Sobic009G214200 Sobic004G019500--Sobic001G326300 Sobic007G210000 Sobic007G210000 Sobic004G019500--Sobic007G210000 Sobic004G019500--Sobic001G022500 Sobic004G225600 Sobic004G225600 Sobic004G019500--Sobic004G225600 Sobic003G434700 Sobic003G434700 Sobic004G019500--Sobic003G434700 Sobic004G003900 Sobic004G003900 Sobic004G019500--Sobic004G003900 Sobic001G379200--Sobic001G326300 Sobic001G379200--Sobic001G022500 Sobic001G246500 Sobic001G246500 Sobic001G379200--Sobic001G246500 Sobic007G225000 Sobic007G225000 Sobic001G379200--Sobic007G225000 Sobic004G263200 Sobic004G263200 Sobic001G379200--Sobic004G263200 Sobic001G208700 Sobic001G208700 Sobic001G379200--Sobic001G208700 Sobic004G333700 Sobic004G333700 Sobic001G379200--Sobic004G333700 Sobic001G379200--Sobic004G225600 Sobic001G379200--Sobic008G092532 Sobic001G022500--Sobic003G434700 Sobic001G022500--Sobic004G225600 Sobic001G022500--Sobic004G003900 Sobic003G162800 Sobic003G162800 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic003G067100 Sobic003G067100 Sobic001G022500--Sobic003G067100 Sobic001G375000 Sobic001G375000 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200 Sobic001G417500 Sobic001G417500 Sobic004G351800--Sobic001G417500 Sobic008G017100 Sobic008G017100 Sobic004G351800--Sobic008G017100 Sobic001G261900 Sobic001G261900 Sobic004G351800--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G351800--Sobic006G269800 Sobic004G107200 Sobic004G107200 Sobic004G351800--Sobic004G107200 Sobic002G052400 Sobic002G052400 Sobic004G351800--Sobic002G052400 Sobic004G351800--Sobic001G326300 Sobic007G173500 Sobic007G173500 Sobic004G351800--Sobic007G173500 Sobic006G128400 Sobic006G128400 Sobic004G351800--Sobic006G128400 Sobic001G035900 Sobic001G035900 Sobic002G055300--Sobic001G035900 Sobic005G128400 Sobic005G128400 Sobic002G055300--Sobic005G128400 Sobic004G039200 Sobic004G039200 Sobic002G055300--Sobic004G039200 Sobic003G254000 Sobic003G254000 Sobic002G055300--Sobic003G254000 Sobic009G024000 Sobic009G024000 Sobic002G055300--Sobic009G024000 Sobic001G124000 Sobic001G124000 Sobic002G055300--Sobic001G124000 Sobic009G138800 Sobic009G138800 Sobic002G055300--Sobic009G138800 Sobic003G293200 Sobic003G293200 Sobic002G055300--Sobic003G293200 Sobic004G009600 Sobic004G009600 Sobic002G055300--Sobic004G009600 Sobic004G144400--Sobic004G019500 Sobic008G067100 Sobic008G067100 Sobic004G144400--Sobic008G067100 Sobic008G090900 Sobic008G090900 Sobic004G144400--Sobic008G090900 Sobic004G144400--Sobic004G003900 Sobic004G144400--Sobic002G181132 Sobic004G301200 Sobic004G301200 Sobic004G144400--Sobic004G301200 Sobic009G092900 Sobic009G092900 Sobic004G144400--Sobic009G092900 Sobic002G218500 Sobic002G218500 Sobic004G144400--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic004G144400--Sobic009G129100 Sobic005G022800 Sobic005G022800 Sobic005G197300--Sobic005G022800 Sobic001G514100 Sobic001G514100 Sobic005G197300--Sobic001G514100 Sobic005G197300--Sobic001G099000 Sobic004G255500 Sobic004G255500 Sobic005G197300--Sobic004G255500 Sobic006G273400 Sobic006G273400 Sobic005G197300--Sobic006G273400 Sobic005G197300--Sobic004G263200 Sobic005G197300--Sobic001G022500 Sobic002G209600 Sobic002G209600 Sobic005G197300--Sobic002G209600 Sobic005G197300--Sobic004G225600 Sobic001G227200 Sobic001G227200 Sobic008G092532--Sobic001G227200 Sobic004G258700 Sobic004G258700 Sobic008G092532--Sobic004G258700 Sobic007G054400 Sobic007G054400 Sobic008G092532--Sobic007G054400 Sobic010G277500 Sobic010G277500 Sobic008G092532--Sobic010G277500 Sobic003G101500 Sobic003G101500 Sobic008G092532--Sobic003G101500 Sobic010G172000 Sobic010G172000 Sobic008G092532--Sobic010G172000 Sobic007G225800 Sobic007G225800 Sobic008G092532--Sobic007G225800 Sobic008G092532--Sobic007G210000 Sobic008G092532--Sobic004G107200 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic003G045300 Sobic003G045300 Sobic002G181132--Sobic003G045300 Sobic002G181132--Sobic004G003900 Sobic002G181132--Sobic001G375000 Sobic002G181132--Sobic003G162800 Sobic002G181132--Sobic008G090900 Sobic002G181132--Sobic009G092900 Sobic003G345900 Sobic003G345900 Sobic002G181132--Sobic003G345900 Sobic002G156100 Sobic002G156100 Sobic002G181132--Sobic002G156100
Octagon: transcription factors


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