Gene annotation
Transcriptome id Sobic.001G035900.7,Sobic.001G035900.5,Sobic.001G035900.3,Sobic.001G035900.4,Sobic.001G035900.2,Sobic.001G035900.6
Synonym Sb01g003350
Functional annotation expressed protein
UniProt A0A1Z5S453 , A0A1Z5S462 , A0A1Z5S460
Pfam -
Panther DB PTHR21402 PTHR21402:SF10 PTHR21402:SF10 PTHR21402
NCBI CDD -
KEGG Orthology K13156; U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04160 : -
RAP-DB (Rice) LOC_Os04g28170.1 : expressed protein
MaizeGDB (Corn) Zm00025a011935
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G035900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
3 Sobic.002G064750 - -
4 Sobic.007G099100 - -
5 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.003G429650 - -
7 Sobic.010G176550 - -
8 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
9 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
10 Sobic.003G052200 G-patch domain containing protein, expressed -
11 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -
12 Sobic.004G258700 PHD-finger family protein, expressed -
13 Sobic.002G055300 pentatricopeptide, putative, expressed -
14 Sobic.010G277500 expressed protein -
15 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
16 Sobic.006G182900 expressed protein -
17 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
18 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
19 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
20 Sobic.005G225800 white-brown complex homolog protein 11, putative, expressed -


Gene co-expression network
sample Sobic001G035900 Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic001G035900--Sobic003G254000 Sobic002G031400 Sobic002G031400 Sobic001G035900--Sobic002G031400 Sobic002G064750 Sobic002G064750 Sobic001G035900--Sobic002G064750 Sobic007G099100 Sobic007G099100 Sobic001G035900--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic001G035900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic001G035900--Sobic003G429650 Sobic010G176550 Sobic010G176550 Sobic001G035900--Sobic010G176550 Sobic007G161000 Sobic007G161000 Sobic001G035900--Sobic007G161000 Sobic009G024000 Sobic009G024000 Sobic001G035900--Sobic009G024000 Sobic003G254000--Sobic001G035900 Sobic001G261573 Sobic001G261573 Sobic003G254000--Sobic001G261573 Sobic004G035000 Sobic004G035000 Sobic003G254000--Sobic004G035000 Sobic003G254000--Sobic002G031400 Sobic005G039500 Sobic005G039500 Sobic003G254000--Sobic005G039500 Sobic003G254000--Sobic002G064750 Sobic003G254000--Sobic001G274200 Sobic003G254000--Sobic007G099100 Sobic003G254000--Sobic003G429650 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic002G031400--Sobic007G161000 Sobic002G031400--Sobic001G035900 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic002G064750--Sobic001G035900 Sobic002G064750--Sobic003G254000 Sobic002G064750--Sobic003G429650 Sobic002G064750--Sobic007G099100 Sobic002G064750--Sobic001G274200 Sobic002G064750--Sobic002G031400 Sobic006G145200 Sobic006G145200 Sobic002G064750--Sobic006G145200 Sobic006G182900 Sobic006G182900 Sobic002G064750--Sobic006G182900 Sobic004G178500 Sobic004G178500 Sobic002G064750--Sobic004G178500 Sobic007G099100--Sobic001G035900 Sobic007G099100--Sobic003G254000 Sobic007G099100--Sobic002G031400 Sobic007G099100--Sobic010G277500 Sobic007G099100--Sobic001G274200 Sobic010G136600 Sobic010G136600 Sobic007G099100--Sobic010G136600 Sobic007G099100--Sobic002G064750 Sobic006G216800 Sobic006G216800 Sobic007G099100--Sobic006G216800 Sobic006G209850 Sobic006G209850 Sobic007G099100--Sobic006G209850 Sobic001G420200 Sobic001G420200 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic002G243900 Sobic002G243900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic006G048500 Sobic006G048500 Sobic003G429650--Sobic006G048500 Sobic003G429650--Sobic006G182900 Sobic003G148000 Sobic003G148000 Sobic003G429650--Sobic003G148000 Sobic005G144400 Sobic005G144400 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic002G006900 Sobic002G006900 Sobic003G429650--Sobic002G006900 Sobic010G176550--Sobic002G031400 Sobic004G034800 Sobic004G034800 Sobic010G176550--Sobic004G034800 Sobic010G176550--Sobic001G261573 Sobic003G217700 Sobic003G217700 Sobic010G176550--Sobic003G217700 Sobic007G185700 Sobic007G185700 Sobic010G176550--Sobic007G185700 Sobic010G176550--Sobic001G035900 Sobic003G234900 Sobic003G234900 Sobic010G176550--Sobic003G234900 Sobic010G005600 Sobic010G005600 Sobic010G176550--Sobic010G005600 Sobic010G032900 Sobic010G032900 Sobic010G176550--Sobic010G032900 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic009G024000--Sobic004G039200 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic008G113100 Sobic008G113100 Sobic009G024000--Sobic008G113100 Sobic009G024000--Sobic007G117400 Sobic009G040600 Sobic009G040600 Sobic009G024000--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic009G024000--Sobic004G009600 Sobic009G024000--Sobic002G309600 Sobic003G101500 Sobic003G101500 Sobic009G024000--Sobic003G101500
Octagon: transcription factors


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