Gene annotation
Transcriptome id Sobic.002G055300.1
Synonym Sb02g004626
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W2H7
Pfam PF13041 PF01535
Panther DB PTHR24015:SF905 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64320 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g22370.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a045184
Brachypodium KQJ96531 , PNT67311 , PNT67313 , PNT67312
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
2 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
3 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
4 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
5 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
6 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
7 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
8 Sobic.003G293200 plus-3 domain containing protein, expressed -
9 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
10 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
11 Sobic.007G099100 - -
12 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
13 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
14 Sobic.001G326300 PPR repeat domain containing protein, putative, expressed -
15 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
16 Sobic.003G052200 G-patch domain containing protein, expressed -
17 Sobic.010G277500 expressed protein -
18 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
19 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
20 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -


Gene co-expression network
sample Sobic002G055300 Sobic002G055300 Sobic001G035900 Sobic001G035900 Sobic002G055300--Sobic001G035900 Sobic005G128400 Sobic005G128400 Sobic002G055300--Sobic005G128400 Sobic004G039200 Sobic004G039200 Sobic002G055300--Sobic004G039200 Sobic003G254000 Sobic003G254000 Sobic002G055300--Sobic003G254000 Sobic009G024000 Sobic009G024000 Sobic002G055300--Sobic009G024000 Sobic001G124000 Sobic001G124000 Sobic002G055300--Sobic001G124000 Sobic009G138800 Sobic009G138800 Sobic002G055300--Sobic009G138800 Sobic003G293200 Sobic003G293200 Sobic002G055300--Sobic003G293200 Sobic004G009600 Sobic004G009600 Sobic002G055300--Sobic004G009600 Sobic001G035900--Sobic003G254000 Sobic002G031400 Sobic002G031400 Sobic001G035900--Sobic002G031400 Sobic002G064750 Sobic002G064750 Sobic001G035900--Sobic002G064750 Sobic007G099100 Sobic007G099100 Sobic001G035900--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic001G035900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic001G035900--Sobic003G429650 Sobic010G176550 Sobic010G176550 Sobic001G035900--Sobic010G176550 Sobic007G161000 Sobic007G161000 Sobic001G035900--Sobic007G161000 Sobic001G035900--Sobic009G024000 Sobic005G128400--Sobic003G293200 Sobic003G266001 Sobic003G266001 Sobic005G128400--Sobic003G266001 Sobic001G154900 Sobic001G154900 Sobic005G128400--Sobic001G154900 Sobic001G016600 Sobic001G016600 Sobic005G128400--Sobic001G016600 Sobic001G241200 Sobic001G241200 Sobic005G128400--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic005G128400--Sobic007G105100 Sobic010G069100 Sobic010G069100 Sobic005G128400--Sobic010G069100 Sobic001G540400 Sobic001G540400 Sobic005G128400--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic005G128400--Sobic005G008800 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic007G117400 Sobic007G117400 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic003G254000--Sobic001G035900 Sobic001G261573 Sobic001G261573 Sobic003G254000--Sobic001G261573 Sobic004G035000 Sobic004G035000 Sobic003G254000--Sobic004G035000 Sobic003G254000--Sobic002G031400 Sobic005G039500 Sobic005G039500 Sobic003G254000--Sobic005G039500 Sobic003G254000--Sobic002G064750 Sobic003G254000--Sobic001G274200 Sobic003G254000--Sobic007G099100 Sobic003G254000--Sobic003G429650 Sobic009G024000--Sobic004G039200 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic009G024000--Sobic007G117400 Sobic009G040600 Sobic009G040600 Sobic009G024000--Sobic009G040600 Sobic009G024000--Sobic004G009600 Sobic002G309600 Sobic002G309600 Sobic009G024000--Sobic002G309600 Sobic009G024000--Sobic003G101500 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic001G124000--Sobic004G039200 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic001G124000--Sobic007G117400 Sobic009G065100 Sobic009G065100 Sobic001G124000--Sobic009G065100 Sobic010G277500 Sobic010G277500 Sobic001G124000--Sobic010G277500 Sobic008G011100 Sobic008G011100 Sobic001G124000--Sobic008G011100 Sobic005G104500 Sobic005G104500 Sobic009G138800--Sobic005G104500 Sobic007G126600 Sobic007G126600 Sobic009G138800--Sobic007G126600 Sobic009G138800--Sobic007G161000 Sobic006G209850 Sobic006G209850 Sobic009G138800--Sobic006G209850 Sobic009G138800--Sobic007G117400 Sobic001G511500 Sobic001G511500 Sobic009G138800--Sobic001G511500 Sobic003G280800 Sobic003G280800 Sobic009G138800--Sobic003G280800 Sobic009G138800--Sobic001G274200 Sobic003G119000 Sobic003G119000 Sobic009G138800--Sobic003G119000 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic004G009600--Sobic010G277500
Octagon: transcription factors


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