Gene annotation
Transcriptome id Sobic.002G064750.1
Synonym -
Functional annotation -
UniProt A0A1W0W2Q4
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53570 : mitogen-activated protein kinase kinase kinase 3
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
2 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G429650 - -
4 Sobic.007G099100 - -
5 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
7 Sobic.006G145200 expressed protein -
8 Sobic.006G182900 expressed protein -
9 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
10 Sobic.001G081200 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
11 Sobic.010G143800 expressed protein -
12 Sobic.001G133466 - -
13 Sobic.006G065600 expressed protein -
14 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -
15 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
16 Sobic.002G029900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.010G176550 - -
18 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
19 Sobic.001G261573 - -
20 Sobic.005G159000 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic002G064750 Sobic002G064750 Sobic001G035900 Sobic001G035900 Sobic002G064750--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G064750--Sobic003G254000 Sobic003G429650 Sobic003G429650 Sobic002G064750--Sobic003G429650 Sobic007G099100 Sobic007G099100 Sobic002G064750--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic002G064750--Sobic001G274200 Sobic002G031400 Sobic002G031400 Sobic002G064750--Sobic002G031400 Sobic006G145200 Sobic006G145200 Sobic002G064750--Sobic006G145200 Sobic006G182900 Sobic006G182900 Sobic002G064750--Sobic006G182900 Sobic004G178500 Sobic004G178500 Sobic002G064750--Sobic004G178500 Sobic001G035900--Sobic003G254000 Sobic001G035900--Sobic002G031400 Sobic001G035900--Sobic002G064750 Sobic001G035900--Sobic007G099100 Sobic001G035900--Sobic001G274200 Sobic001G035900--Sobic003G429650 Sobic010G176550 Sobic010G176550 Sobic001G035900--Sobic010G176550 Sobic007G161000 Sobic007G161000 Sobic001G035900--Sobic007G161000 Sobic009G024000 Sobic009G024000 Sobic001G035900--Sobic009G024000 Sobic003G254000--Sobic001G035900 Sobic001G261573 Sobic001G261573 Sobic003G254000--Sobic001G261573 Sobic004G035000 Sobic004G035000 Sobic003G254000--Sobic004G035000 Sobic003G254000--Sobic002G031400 Sobic005G039500 Sobic005G039500 Sobic003G254000--Sobic005G039500 Sobic003G254000--Sobic002G064750 Sobic003G254000--Sobic001G274200 Sobic003G254000--Sobic007G099100 Sobic003G254000--Sobic003G429650 Sobic006G048500 Sobic006G048500 Sobic003G429650--Sobic006G048500 Sobic003G429650--Sobic006G182900 Sobic003G148000 Sobic003G148000 Sobic003G429650--Sobic003G148000 Sobic005G144400 Sobic005G144400 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic002G243900 Sobic002G243900 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic002G006900 Sobic002G006900 Sobic003G429650--Sobic002G006900 Sobic007G099100--Sobic001G035900 Sobic007G099100--Sobic003G254000 Sobic007G099100--Sobic002G031400 Sobic010G277500 Sobic010G277500 Sobic007G099100--Sobic010G277500 Sobic007G099100--Sobic001G274200 Sobic010G136600 Sobic010G136600 Sobic007G099100--Sobic010G136600 Sobic007G099100--Sobic002G064750 Sobic006G216800 Sobic006G216800 Sobic007G099100--Sobic006G216800 Sobic006G209850 Sobic006G209850 Sobic007G099100--Sobic006G209850 Sobic001G420200 Sobic001G420200 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic002G031400--Sobic010G277500 Sobic002G031400--Sobic007G161000 Sobic002G031400--Sobic001G035900 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic010G149200 Sobic010G149200 Sobic006G145200--Sobic010G149200 Sobic010G243900 Sobic010G243900 Sobic006G145200--Sobic010G243900 Sobic006G145200--Sobic002G064750 Sobic010G143800 Sobic010G143800 Sobic006G145200--Sobic010G143800 Sobic007G023200 Sobic007G023200 Sobic006G145200--Sobic007G023200 Sobic006G145200--Sobic001G035900 Sobic001G191600 Sobic001G191600 Sobic006G145200--Sobic001G191600 Sobic004G164400 Sobic004G164400 Sobic006G145200--Sobic004G164400 Sobic001G198100 Sobic001G198100 Sobic006G145200--Sobic001G198100 Sobic006G182900--Sobic003G429650 Sobic006G182900--Sobic006G048500 Sobic006G182900--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G182900--Sobic001G365900 Sobic007G116200 Sobic007G116200 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic002G134200 Sobic002G134200 Sobic006G182900--Sobic002G134200 Sobic006G182900--Sobic001G214300 Sobic009G209300 Sobic009G209300 Sobic006G182900--Sobic009G209300 Sobic001G298900 Sobic001G298900 Sobic004G178500--Sobic001G298900 Sobic002G198200 Sobic002G198200 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic006G133900 Sobic006G133900 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic006G270700 Sobic006G270700 Sobic004G178500--Sobic006G270700 Sobic004G178500--Sobic001G365900 Sobic003G388100 Sobic003G388100 Sobic004G178500--Sobic003G388100
Octagon: transcription factors


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