Gene annotation
Transcriptome id Sobic.005G159000.1
Synonym GAPC2, GAPC-2
Functional annotation glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
UniProt A0A1B6PSS3
Pfam PF02800
Panther DB PTHR10836 PTHR10836:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G13440 : glyceraldehyde-3-phosphate dehydrogenase C2
RAP-DB (Rice) LOC_Os08g03290.1 : glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a031861 , Zm00025a021282
Brachypodium -
Barley -
Wheat -
Populus PNT58052 , PNT58053


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cDNA sequences
Sobic.005G159000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
2 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
3 Sobic.001G133466 - -
4 Sobic.001G287201 - -
5 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
7 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
8 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
9 Sobic.006G048500 - -
10 Sobic.003G429650 - -
11 Sobic.001G111900 - -
12 Sobic.009G210500 expressed protein -
13 Sobic.006G182900 expressed protein -
14 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
15 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
16 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
17 Sobic.009G209300 starch synthase, putative, expressed -
18 Sobic.004G326200 expressed protein -
19 Sobic.001G205200 expressed protein -
20 Sobic.003G113200 5-nucleotidase domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G159000 Sobic005G159000 Sobic003G280800 Sobic003G280800 Sobic005G159000--Sobic003G280800 Sobic002G309600 Sobic002G309600 Sobic005G159000--Sobic002G309600 Sobic001G133466 Sobic001G133466 Sobic005G159000--Sobic001G133466 Sobic001G287201 Sobic001G287201 Sobic005G159000--Sobic001G287201 Sobic001G420200 Sobic001G420200 Sobic005G159000--Sobic001G420200 Sobic001G533700 Sobic001G533700 Sobic005G159000--Sobic001G533700 Sobic001G274200 Sobic001G274200 Sobic005G159000--Sobic001G274200 Sobic002G134200 Sobic002G134200 Sobic005G159000--Sobic002G134200 Sobic006G048500 Sobic006G048500 Sobic005G159000--Sobic006G048500 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic009G161600 Sobic009G161600 Sobic001G133466--Sobic009G161600 Sobic001G133466--Sobic001G274200 Sobic007G096600 Sobic007G096600 Sobic001G133466--Sobic007G096600 Sobic001G133466--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic001G133466--Sobic008G173900 Sobic001G111900 Sobic001G111900 Sobic001G133466--Sobic001G111900 Sobic010G123901 Sobic010G123901 Sobic001G133466--Sobic010G123901 Sobic002G243900 Sobic002G243900 Sobic001G133466--Sobic002G243900 Sobic003G176500 Sobic003G176500 Sobic001G133466--Sobic003G176500 Sobic003G429650 Sobic003G429650 Sobic001G287201--Sobic003G429650 Sobic001G287201--Sobic003G280800 Sobic001G287201--Sobic002G243900 Sobic001G287201--Sobic006G048500 Sobic004G007100 Sobic004G007100 Sobic001G287201--Sobic004G007100 Sobic006G182900 Sobic006G182900 Sobic001G287201--Sobic006G182900 Sobic001G287201--Sobic002G006900 Sobic001G287201--Sobic007G096600 Sobic009G104201 Sobic009G104201 Sobic001G287201--Sobic009G104201 Sobic001G420200--Sobic001G274200 Sobic002G157000 Sobic002G157000 Sobic001G420200--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic002G248400 Sobic002G248400 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic007G037900 Sobic007G037900 Sobic001G420200--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic001G420200--Sobic002G144933 Sobic007G178700 Sobic007G178700 Sobic001G420200--Sobic007G178700 Sobic004G158200 Sobic004G158200 Sobic001G533700--Sobic004G158200 Sobic005G021500 Sobic005G021500 Sobic001G533700--Sobic005G021500 Sobic001G205200 Sobic001G205200 Sobic001G533700--Sobic001G205200 Sobic007G167500 Sobic007G167500 Sobic001G533700--Sobic007G167500 Sobic001G533700--Sobic002G006900 Sobic001G533700--Sobic008G173900 Sobic001G533700--Sobic006G048500 Sobic009G065100 Sobic009G065100 Sobic001G533700--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic001G533700--Sobic009G210500 Sobic001G274200--Sobic001G420200 Sobic001G274200--Sobic007G096600 Sobic001G274200--Sobic003G268300 Sobic001G274200--Sobic008G173900 Sobic001G274200--Sobic002G144933 Sobic001G274200--Sobic001G133466 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic001G274200--Sobic010G123901 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic006G048500--Sobic004G007100 Sobic005G144400 Sobic005G144400 Sobic006G048500--Sobic005G144400 Sobic002G145101 Sobic002G145101 Sobic006G048500--Sobic002G145101 Sobic003G148000 Sobic003G148000 Sobic006G048500--Sobic003G148000 Sobic006G048500--Sobic003G429650 Sobic006G048500--Sobic002G243900 Sobic006G048600 Sobic006G048600 Sobic006G048500--Sobic006G048600 Sobic006G048500--Sobic002G006900 Sobic006G048500--Sobic006G182900
Octagon: transcription factors


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