Gene annotation
Transcriptome id Sobic.001G081200.1,Sobic.001G081200.2
Synonym TAFII59, ATTAF6, TAF6, Sb01g013980
Functional annotation TATA binding protein-associated factor, putative, expressed
UniProt A0A1B6QHU9
Pfam PF02969 PF07571
Panther DB PTHR10221 PTHR10221:SF11
NCBI CDD KOG2549; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
KEGG Orthology K03131; transcription initiation factor TFIID subunit 6
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04950 : TATA BOX ASSOCIATED FACTOR II 59
RAP-DB (Rice) LOC_Os01g32750.1 : TATA binding protein-associated factor, putative, expressed
MaizeGDB (Corn) Zm00025a052851
Brachypodium KQJ89697 , KQJ89696
Barley HORVU1Hr1G000620.9 , HORVU1Hr1G000620.8 , HORVU1Hr1G000620.3 , HORVU1Hr1G000620.2 , HORVU1Hr1G000620.1 , HORVU1Hr1G000620.7 , HORVU1Hr1G000620.6 , HORVU1Hr1G000620.5 , HORVU1Hr1G000620.4 , HORVU1Hr1G000620.11 , HORVU1Hr1G000620.10
Wheat TraesCS1D02G002300 , TraesCS1D02G002300 , TraesCS1D02G002300 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1B02G007800 , TraesCS1B02G007800 , TraesCS1B02G007800 , TraesCS1A02G005600 , TraesCS1B02G007800
Populus -


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cDNA sequences
Sobic.001G081200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G143800 expressed protein -
2 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
3 Sobic.002G064750 - -
4 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
5 Sobic.001G222250 - -
6 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
7 Sobic.004G181700 calmodulin binding protein, putative, expressed -
8 Sobic.006G145200 expressed protein -
9 Sobic.003G217700 - -
10 Sobic.004G181600 calmodulin binding protein, putative, expressed -
11 Sobic.001G420400 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
12 Sobic.010G176550 - -
13 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
14 Sobic.006G182900 expressed protein -
15 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
16 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
17 Sobic.005G110475 - -
18 Sobic.009G161550 - -
19 Sobic.001G500300 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
20 Sobic.002G425700 ribonucleases P/MRP protein subunit POP1 containing protein, expressed K01164: ribonuclease P/MRP protein subunit POP1


Gene co-expression network
sample Sobic001G081200 Sobic001G081200 Sobic010G143800 Sobic010G143800 Sobic001G081200--Sobic010G143800 Sobic004G178500 Sobic004G178500 Sobic001G081200--Sobic004G178500 Sobic002G064750 Sobic002G064750 Sobic001G081200--Sobic002G064750 Sobic001G191600 Sobic001G191600 Sobic001G081200--Sobic001G191600 Sobic001G222250 Sobic001G222250 Sobic001G081200--Sobic001G222250 Sobic002G031400 Sobic002G031400 Sobic001G081200--Sobic002G031400 Sobic004G181700 Sobic004G181700 Sobic001G081200--Sobic004G181700 Sobic006G145200 Sobic006G145200 Sobic001G081200--Sobic006G145200 Sobic003G217700 Sobic003G217700 Sobic001G081200--Sobic003G217700 Sobic005G027400 Sobic005G027400 Sobic010G143800--Sobic005G027400 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic001G298900 Sobic001G298900 Sobic004G178500--Sobic001G298900 Sobic002G198200 Sobic002G198200 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic006G133900 Sobic006G133900 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic006G270700 Sobic006G270700 Sobic004G178500--Sobic006G270700 Sobic004G178500--Sobic001G365900 Sobic003G388100 Sobic003G388100 Sobic004G178500--Sobic003G388100 Sobic001G035900 Sobic001G035900 Sobic002G064750--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G064750--Sobic003G254000 Sobic003G429650 Sobic003G429650 Sobic002G064750--Sobic003G429650 Sobic007G099100 Sobic007G099100 Sobic002G064750--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic002G064750--Sobic001G274200 Sobic002G064750--Sobic002G031400 Sobic002G064750--Sobic006G145200 Sobic006G182900 Sobic006G182900 Sobic002G064750--Sobic006G182900 Sobic002G064750--Sobic004G178500 Sobic006G086500 Sobic006G086500 Sobic001G191600--Sobic006G086500 Sobic003G029700 Sobic003G029700 Sobic001G191600--Sobic003G029700 Sobic006G142775 Sobic006G142775 Sobic001G191600--Sobic006G142775 Sobic004G205800 Sobic004G205800 Sobic001G191600--Sobic004G205800 Sobic001G318432 Sobic001G318432 Sobic001G191600--Sobic001G318432 Sobic001G191600--Sobic001G365900 Sobic001G191600--Sobic002G294800 Sobic010G076300 Sobic010G076300 Sobic001G191600--Sobic010G076300 Sobic002G173000 Sobic002G173000 Sobic001G191600--Sobic002G173000 Sobic001G222250--Sobic010G143800 Sobic001G222250--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic001G222250--Sobic010G079900 Sobic004G135300 Sobic004G135300 Sobic001G222250--Sobic004G135300 Sobic001G222250--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic001G222250--Sobic003G109700 Sobic001G222250--Sobic001G081200 Sobic001G298600 Sobic001G298600 Sobic001G222250--Sobic001G298600 Sobic001G362200 Sobic001G362200 Sobic001G222250--Sobic001G362200 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic002G031400--Sobic007G161000 Sobic002G031400--Sobic001G035900 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic004G317100 Sobic004G317100 Sobic004G181700--Sobic004G317100 Sobic002G276100 Sobic002G276100 Sobic004G181700--Sobic002G276100 Sobic001G159400 Sobic001G159400 Sobic004G181700--Sobic001G159400 Sobic004G181700--Sobic004G181600 Sobic008G146900 Sobic008G146900 Sobic004G181700--Sobic008G146900 Sobic004G181700--Sobic001G191600 Sobic009G097200 Sobic009G097200 Sobic004G181700--Sobic009G097200 Sobic004G181700--Sobic006G086500 Sobic008G172300 Sobic008G172300 Sobic004G181700--Sobic008G172300 Sobic010G149200 Sobic010G149200 Sobic006G145200--Sobic010G149200 Sobic010G243900 Sobic010G243900 Sobic006G145200--Sobic010G243900 Sobic006G145200--Sobic002G064750 Sobic006G145200--Sobic010G143800 Sobic007G023200 Sobic007G023200 Sobic006G145200--Sobic007G023200 Sobic006G145200--Sobic001G035900 Sobic006G145200--Sobic001G191600 Sobic004G164400 Sobic004G164400 Sobic006G145200--Sobic004G164400 Sobic001G198100 Sobic001G198100 Sobic006G145200--Sobic001G198100 Sobic007G185700 Sobic007G185700 Sobic003G217700--Sobic007G185700 Sobic003G217700--Sobic010G176550 Sobic003G217700--Sobic007G023200 Sobic001G530900 Sobic001G530900 Sobic003G217700--Sobic001G530900 Sobic005G084500 Sobic005G084500 Sobic003G217700--Sobic005G084500 Sobic004G042200 Sobic004G042200 Sobic003G217700--Sobic004G042200 Sobic008G001900 Sobic008G001900 Sobic003G217700--Sobic008G001900 Sobic003G217700--Sobic001G198100 Sobic004G238200 Sobic004G238200 Sobic003G217700--Sobic004G238200
Octagon: transcription factors


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