Gene annotation
Transcriptome id Sobic.001G420400.2,Sobic.001G420400.1
Synonym SYNC1ARATH, Sb01g039570, EMB2755, SYNC1
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt C5WPG5
Pfam PF00458 PF01336 PF00152
Panther DB PTHR22594 PTHR22594:SF34
NCBI CDD -
KEGG Orthology K01893; NARS, asparaginyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0003676nucleic acid binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G56680 : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os01g27520.1 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036277
Brachypodium KQK07517
Barley HORVU1Hr1G021130.2 , HORVU1Hr1G021130.3 , HORVU1Hr1G021130.1 , HORVU1Hr1G021130.4 , HORVU1Hr1G021130.5
Wheat TraesCS1D02G094600 , TraesCS1A02G102600 , TraesCS1B02G113400
Populus PNS93113 , PNS93115 , PNS93114 , PNS93117 , PNS93116


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cDNA sequences
Sobic.001G420400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
2 Sobic.001G016201 - -
3 Sobic.009G121000 expressed protein -
4 Sobic.010G153201 - -
5 Sobic.001G530900 expressed protein -
6 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
7 Sobic.006G089500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 9, putative, expressed K14486: K14486, auxin response factor
8 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
9 Sobic.003G442700 - -
10 Sobic.003G217700 - -
11 Sobic.005G118400 expressed protein -
12 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
13 Sobic.005G111550 - -
14 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
15 Sobic.001G097100 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
16 Sobic.004G181600 calmodulin binding protein, putative, expressed -
17 Sobic.001G540600 expressed protein -
18 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
19 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
20 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase


Gene co-expression network
sample Sobic001G420400 Sobic001G420400 Sobic004G179400 Sobic004G179400 Sobic001G420400--Sobic004G179400 Sobic001G016201 Sobic001G016201 Sobic001G420400--Sobic001G016201 Sobic009G121000 Sobic009G121000 Sobic001G420400--Sobic009G121000 Sobic010G153201 Sobic010G153201 Sobic001G420400--Sobic010G153201 Sobic001G530900 Sobic001G530900 Sobic001G420400--Sobic001G530900 Sobic009G215500 Sobic009G215500 Sobic001G420400--Sobic009G215500 Sobic006G089500 Sobic006G089500 Sobic001G420400--Sobic006G089500 Sobic007G185700 Sobic007G185700 Sobic001G420400--Sobic007G185700 Sobic003G442700 Sobic003G442700 Sobic001G420400--Sobic003G442700 Sobic001G540600 Sobic001G540600 Sobic004G179400--Sobic001G540600 Sobic001G060500 Sobic001G060500 Sobic004G179400--Sobic001G060500 Sobic009G207900 Sobic009G207900 Sobic004G179400--Sobic009G207900 Sobic002G028400 Sobic002G028400 Sobic004G179400--Sobic002G028400 Sobic008G074000 Sobic008G074000 Sobic004G179400--Sobic008G074000 Sobic003G125900 Sobic003G125900 Sobic004G179400--Sobic003G125900 Sobic001G378100 Sobic001G378100 Sobic004G179400--Sobic001G378100 Sobic009G170200 Sobic009G170200 Sobic004G179400--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic004G179400--Sobic001G504400 Sobic001G016201--Sobic001G420400 Sobic001G016201--Sobic009G121000 Sobic001G016201--Sobic010G153201 Sobic001G016100 Sobic001G016100 Sobic001G016201--Sobic001G016100 Sobic005G118400 Sobic005G118400 Sobic001G016201--Sobic005G118400 Sobic003G332700 Sobic003G332700 Sobic001G016201--Sobic003G332700 Sobic001G016201--Sobic007G185700 Sobic002G006600 Sobic002G006600 Sobic001G016201--Sobic002G006600 Sobic001G016201--Sobic003G442700 Sobic010G043800 Sobic010G043800 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic003G160800 Sobic003G160800 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic007G103400 Sobic007G103400 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic002G097700 Sobic002G097700 Sobic010G153201--Sobic002G097700 Sobic010G153201--Sobic005G118400 Sobic010G153201--Sobic001G540600 Sobic010G153201--Sobic001G530900 Sobic002G073250 Sobic002G073250 Sobic010G153201--Sobic002G073250 Sobic010G153201--Sobic001G378100 Sobic010G153201--Sobic004G179400 Sobic010G153201--Sobic010G002700 Sobic010G153201--Sobic007G185700 Sobic001G530900--Sobic010G002700 Sobic001G530900--Sobic009G215500 Sobic001G530900--Sobic001G378100 Sobic001G530900--Sobic007G185700 Sobic001G530900--Sobic005G118400 Sobic005G084500 Sobic005G084500 Sobic001G530900--Sobic005G084500 Sobic001G530900--Sobic003G332700 Sobic001G465700 Sobic001G465700 Sobic001G530900--Sobic001G465700 Sobic003G217700 Sobic003G217700 Sobic001G530900--Sobic003G217700 Sobic009G215500--Sobic001G530900 Sobic008G044100 Sobic008G044100 Sobic009G215500--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic006G089500--Sobic001G420400 Sobic006G089500--Sobic009G215500 Sobic004G042200 Sobic004G042200 Sobic006G089500--Sobic004G042200 Sobic006G089500--Sobic006G031800 Sobic004G147800 Sobic004G147800 Sobic006G089500--Sobic004G147800 Sobic001G217900 Sobic001G217900 Sobic006G089500--Sobic001G217900 Sobic001G062900 Sobic001G062900 Sobic006G089500--Sobic001G062900 Sobic006G089500--Sobic001G540600 Sobic001G097100 Sobic001G097100 Sobic006G089500--Sobic001G097100 Sobic001G054100 Sobic001G054100 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic003G141100 Sobic003G141100 Sobic007G185700--Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic007G185700--Sobic001G500600 Sobic007G185700--Sobic003G217700 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic003G442700--Sobic001G465700 Sobic004G235600 Sobic004G235600 Sobic003G442700--Sobic004G235600 Sobic008G001900 Sobic008G001900 Sobic003G442700--Sobic008G001900 Sobic003G442700--Sobic003G332700 Sobic003G442700--Sobic009G121000 Sobic002G042500 Sobic002G042500 Sobic003G442700--Sobic002G042500 Sobic001G060401 Sobic001G060401 Sobic003G442700--Sobic001G060401 Sobic004G001300 Sobic004G001300 Sobic003G442700--Sobic004G001300 Sobic001G073900 Sobic001G073900 Sobic003G442700--Sobic001G073900
Octagon: transcription factors


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