Gene annotation
Transcriptome id Sobic.006G089500.1
Synonym SbARF12, Sb06g017490, auxin response factor, ARF1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor 9, putative, expressed
UniProt C5Y8U9
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF24
NCBI CDD -
KEGG Orthology K14486; K14486, auxin response factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G59750 : auxin response factor 1
RAP-DB (Rice) LOC_Os04g36054.1 : auxin response factor 9, putative, expressed
MaizeGDB (Corn) Zm00025a011273
Brachypodium KQJ99896 , KQJ99895 , KQJ82781
Barley HORVU2Hr1G076920.8 , HORVU2Hr1G076920.9 , HORVU2Hr1G076920.6 , HORVU2Hr1G076920.7 , HORVU2Hr1G076920.4 , HORVU2Hr1G076920.5 , HORVU2Hr1G076920.2 , HORVU2Hr1G076920.3 , HORVU2Hr1G076920.1
Wheat TraesCS2A02G309300 , TraesCS2A02G309300 , TraesCS2B02G326400 , TraesCS2B02G326400 , TraesCS2D02G307600 , TraesCS2D02G307600 , TraesCS2D02G307600 , TraesCS2D02G307600
Populus PNT42736 , PNT42737 , PNT42735 , PNT42738 , PNT42739


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cDNA sequences
Sobic.006G089500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G420400 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
2 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
3 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
4 Sobic.006G031800 - -
5 Sobic.004G147800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl isomerase, putative, expressed -
6 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G062900 peptidase, putative, expressed K01301: N-acetylated-alpha-linked acidic dipeptidase
8 Sobic.001G540600 expressed protein -
9 Sobic.001G097100 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
10 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
11 Sobic.002G186400 OsFBX323 - F-box domain containing protein, expressed -
12 Sobic.001G530900 expressed protein -
13 Sobic.009G121000 expressed protein -
14 Sobic.003G220100 - -
15 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
16 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
18 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
19 Sobic.002G239300 OsFBX338 - F-box domain containing protein, expressed -
20 Sobic.004G182900 PHD finger protein, putative, expressed -


Gene co-expression network
sample Sobic006G089500 Sobic006G089500 Sobic001G420400 Sobic001G420400 Sobic006G089500--Sobic001G420400 Sobic009G215500 Sobic009G215500 Sobic006G089500--Sobic009G215500 Sobic004G042200 Sobic004G042200 Sobic006G089500--Sobic004G042200 Sobic006G031800 Sobic006G031800 Sobic006G089500--Sobic006G031800 Sobic004G147800 Sobic004G147800 Sobic006G089500--Sobic004G147800 Sobic001G217900 Sobic001G217900 Sobic006G089500--Sobic001G217900 Sobic001G062900 Sobic001G062900 Sobic006G089500--Sobic001G062900 Sobic001G540600 Sobic001G540600 Sobic006G089500--Sobic001G540600 Sobic001G097100 Sobic001G097100 Sobic006G089500--Sobic001G097100 Sobic004G179400 Sobic004G179400 Sobic001G420400--Sobic004G179400 Sobic001G016201 Sobic001G016201 Sobic001G420400--Sobic001G016201 Sobic009G121000 Sobic009G121000 Sobic001G420400--Sobic009G121000 Sobic010G153201 Sobic010G153201 Sobic001G420400--Sobic010G153201 Sobic001G530900 Sobic001G530900 Sobic001G420400--Sobic001G530900 Sobic001G420400--Sobic009G215500 Sobic001G420400--Sobic006G089500 Sobic007G185700 Sobic007G185700 Sobic001G420400--Sobic007G185700 Sobic003G442700 Sobic003G442700 Sobic001G420400--Sobic003G442700 Sobic009G215500--Sobic001G530900 Sobic008G044100 Sobic008G044100 Sobic009G215500--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic009G038900 Sobic009G038900 Sobic004G042200--Sobic009G038900 Sobic010G002700 Sobic010G002700 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic006G133900 Sobic006G133900 Sobic004G042200--Sobic006G133900 Sobic006G031800--Sobic009G215500 Sobic006G031800--Sobic001G465700 Sobic007G136800 Sobic007G136800 Sobic006G031800--Sobic007G136800 Sobic003G168100 Sobic003G168100 Sobic006G031800--Sobic003G168100 Sobic003G217700 Sobic003G217700 Sobic006G031800--Sobic003G217700 Sobic003G110800 Sobic003G110800 Sobic006G031800--Sobic003G110800 Sobic006G128300 Sobic006G128300 Sobic006G031800--Sobic006G128300 Sobic006G038500 Sobic006G038500 Sobic006G031800--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic006G031800--Sobic002G218500 Sobic004G147800--Sobic001G097100 Sobic001G221800 Sobic001G221800 Sobic004G147800--Sobic001G221800 Sobic004G147800--Sobic006G089500 Sobic001G244700 Sobic001G244700 Sobic004G147800--Sobic001G244700 Sobic008G140200 Sobic008G140200 Sobic004G147800--Sobic008G140200 Sobic003G355200 Sobic003G355200 Sobic004G147800--Sobic003G355200 Sobic010G059000 Sobic010G059000 Sobic004G147800--Sobic010G059000 Sobic004G147800--Sobic009G038900 Sobic001G212300 Sobic001G212300 Sobic004G147800--Sobic001G212300 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G217900--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G258200 Sobic001G258200 Sobic001G217900--Sobic001G258200 Sobic002G206300 Sobic002G206300 Sobic001G217900--Sobic002G206300 Sobic001G263100 Sobic001G263100 Sobic001G217900--Sobic001G263100 Sobic008G033000 Sobic008G033000 Sobic001G217900--Sobic008G033000 Sobic001G217900--Sobic001G540600 Sobic007G090403 Sobic007G090403 Sobic001G062900--Sobic007G090403 Sobic003G342100 Sobic003G342100 Sobic001G062900--Sobic003G342100 Sobic001G062900--Sobic009G215500 Sobic001G073900 Sobic001G073900 Sobic001G062900--Sobic001G073900 Sobic001G062900--Sobic001G530900 Sobic001G531500 Sobic001G531500 Sobic001G062900--Sobic001G531500 Sobic003G332700 Sobic003G332700 Sobic001G062900--Sobic003G332700 Sobic001G105200 Sobic001G105200 Sobic001G062900--Sobic001G105200 Sobic005G001700 Sobic005G001700 Sobic001G062900--Sobic005G001700 Sobic001G540600--Sobic001G378100 Sobic001G540600--Sobic001G217900 Sobic001G077300 Sobic001G077300 Sobic001G540600--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic001G540600--Sobic009G170200 Sobic001G540600--Sobic002G206300 Sobic001G540600--Sobic010G231300 Sobic001G540600--Sobic004G179400 Sobic009G207900 Sobic009G207900 Sobic001G540600--Sobic009G207900 Sobic003G073800 Sobic003G073800 Sobic001G540600--Sobic003G073800 Sobic010G085100 Sobic010G085100 Sobic001G097100--Sobic010G085100 Sobic010G067100 Sobic010G067100 Sobic001G097100--Sobic010G067100 Sobic003G185900 Sobic003G185900 Sobic001G097100--Sobic003G185900 Sobic001G097100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic001G097100--Sobic004G154200 Sobic002G091600 Sobic002G091600 Sobic001G097100--Sobic002G091600 Sobic005G126300 Sobic005G126300 Sobic001G097100--Sobic005G126300 Sobic001G097100--Sobic003G332700 Sobic008G117000 Sobic008G117000 Sobic001G097100--Sobic008G117000
Octagon: transcription factors


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