Gene annotation
Transcriptome id Sobic.004G147800.1,Sobic.004G147800.3,Sobic.004G147800.2,Sobic.004G147800.4
Synonym ROF1, ATFKBP62, Sb04g019590, FKBP62
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptidyl-prolyl isomerase, putative, expressed
UniProt C5XRU1 , A0A1Z5RMG8 , A0A1Z5RMJ3 , A0A1Z5RMZ0
Pfam PF13414 PF00254
Panther DB PTHR10516 PTHR10516:SF324
NCBI CDD KOG0543; FKBP-type peptidyl-prolyl cis-trans isomerase
KEGG Orthology -
Gene Ontology GO:0006457; protein folding


Orthologs (automatic annotation)
TAIR AT3G25230 : rotamase FKBP 1
RAP-DB (Rice) LOC_Os02g28980.1 : peptidyl-prolyl isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a014960 , Zm00025a020348
Brachypodium KQJ99514
Barley HORVU2Hr1G007980.1
Wheat TraesCS2B02G063900 , TraesCS2B02G063900 , TraesCS2D02G050300 , TraesCS2A02G050600 , TraesCS2A02G050600 , TraesCS2A02G050600
Populus -


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cDNA sequences
Sobic.004G147800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G097100 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
2 Sobic.001G221800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
3 Sobic.006G089500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 9, putative, expressed K14486: K14486, auxin response factor
4 Sobic.001G244700 RIO1 family protein, expressed K08851: TP53RK, PRPK, TP53 regulating kinase and related kinases
5 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G355200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
7 Sobic.010G059000 ANTH/ENTH domain containing protein, putative, expressed -
8 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.001G212300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myosin-2 heavy chain, non muscle, putative, expressed -
10 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
11 Sobic.003G282000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@suppressor of phythchrome A, putative, expressed -
12 Sobic.002G186400 OsFBX323 - F-box domain containing protein, expressed -
13 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
14 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
16 Sobic.004G270600 MYB family transcription factor, putative, expressed -
17 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
18 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
19 Sobic.010G016900 calcium-dependent protein kinase isoform AK1, putative, expressed K13412: calcium-dependent protein kinase
20 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G147800 Sobic004G147800 Sobic001G097100 Sobic001G097100 Sobic004G147800--Sobic001G097100 Sobic001G221800 Sobic001G221800 Sobic004G147800--Sobic001G221800 Sobic006G089500 Sobic006G089500 Sobic004G147800--Sobic006G089500 Sobic001G244700 Sobic001G244700 Sobic004G147800--Sobic001G244700 Sobic008G140200 Sobic008G140200 Sobic004G147800--Sobic008G140200 Sobic003G355200 Sobic003G355200 Sobic004G147800--Sobic003G355200 Sobic010G059000 Sobic010G059000 Sobic004G147800--Sobic010G059000 Sobic009G038900 Sobic009G038900 Sobic004G147800--Sobic009G038900 Sobic001G212300 Sobic001G212300 Sobic004G147800--Sobic001G212300 Sobic010G085100 Sobic010G085100 Sobic001G097100--Sobic010G085100 Sobic010G067100 Sobic010G067100 Sobic001G097100--Sobic010G067100 Sobic003G185900 Sobic003G185900 Sobic001G097100--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic001G097100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic001G097100--Sobic004G154200 Sobic002G091600 Sobic002G091600 Sobic001G097100--Sobic002G091600 Sobic005G126300 Sobic005G126300 Sobic001G097100--Sobic005G126300 Sobic003G332700 Sobic003G332700 Sobic001G097100--Sobic003G332700 Sobic008G117000 Sobic008G117000 Sobic001G097100--Sobic008G117000 Sobic001G221800--Sobic003G355200 Sobic009G246300 Sobic009G246300 Sobic001G221800--Sobic009G246300 Sobic001G221800--Sobic001G244700 Sobic004G322700 Sobic004G322700 Sobic001G221800--Sobic004G322700 Sobic006G214300 Sobic006G214300 Sobic001G221800--Sobic006G214300 Sobic001G221800--Sobic010G059000 Sobic003G282000 Sobic003G282000 Sobic001G221800--Sobic003G282000 Sobic004G322600 Sobic004G322600 Sobic001G221800--Sobic004G322600 Sobic003G139500 Sobic003G139500 Sobic001G221800--Sobic003G139500 Sobic001G420400 Sobic001G420400 Sobic006G089500--Sobic001G420400 Sobic009G215500 Sobic009G215500 Sobic006G089500--Sobic009G215500 Sobic004G042200 Sobic004G042200 Sobic006G089500--Sobic004G042200 Sobic006G031800 Sobic006G031800 Sobic006G089500--Sobic006G031800 Sobic006G089500--Sobic004G147800 Sobic001G217900 Sobic001G217900 Sobic006G089500--Sobic001G217900 Sobic001G062900 Sobic001G062900 Sobic006G089500--Sobic001G062900 Sobic001G540600 Sobic001G540600 Sobic006G089500--Sobic001G540600 Sobic006G089500--Sobic001G097100 Sobic002G404800 Sobic002G404800 Sobic001G244700--Sobic002G404800 Sobic002G196600 Sobic002G196600 Sobic001G244700--Sobic002G196600 Sobic001G244700--Sobic009G038900 Sobic001G244600 Sobic001G244600 Sobic001G244700--Sobic001G244600 Sobic001G244700--Sobic001G217900 Sobic001G244700--Sobic010G085100 Sobic006G259800 Sobic006G259800 Sobic001G244700--Sobic006G259800 Sobic003G260100 Sobic003G260100 Sobic001G244700--Sobic003G260100 Sobic001G244700--Sobic008G033000 Sobic008G140200--Sobic010G085100 Sobic004G112100 Sobic004G112100 Sobic008G140200--Sobic004G112100 Sobic008G140200--Sobic002G404800 Sobic004G215800 Sobic004G215800 Sobic008G140200--Sobic004G215800 Sobic006G153400 Sobic006G153400 Sobic008G140200--Sobic006G153400 Sobic009G048900 Sobic009G048900 Sobic008G140200--Sobic009G048900 Sobic001G134100 Sobic001G134100 Sobic008G140200--Sobic001G134100 Sobic009G256100 Sobic009G256100 Sobic008G140200--Sobic009G256100 Sobic010G104800 Sobic010G104800 Sobic008G140200--Sobic010G104800 Sobic003G355200--Sobic001G221800 Sobic003G355200--Sobic006G214300 Sobic003G355200--Sobic003G139500 Sobic008G096700 Sobic008G096700 Sobic003G355200--Sobic008G096700 Sobic003G355200--Sobic003G282000 Sobic009G194500 Sobic009G194500 Sobic003G355200--Sobic009G194500 Sobic003G355200--Sobic009G038900 Sobic003G314000 Sobic003G314000 Sobic003G355200--Sobic003G314000 Sobic003G355200--Sobic002G196600 Sobic002G131200 Sobic002G131200 Sobic010G059000--Sobic002G131200 Sobic010G059000--Sobic001G221800 Sobic002G383800 Sobic002G383800 Sobic010G059000--Sobic002G383800 Sobic002G305000 Sobic002G305000 Sobic010G059000--Sobic002G305000 Sobic010G059000--Sobic003G355200 Sobic010G205100 Sobic010G205100 Sobic010G059000--Sobic010G205100 Sobic001G303100 Sobic001G303100 Sobic010G059000--Sobic001G303100 Sobic001G381600 Sobic001G381600 Sobic010G059000--Sobic001G381600 Sobic010G059000--Sobic009G038900 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100 Sobic008G151100 Sobic008G151100 Sobic001G212300--Sobic008G151100 Sobic003G191700 Sobic003G191700 Sobic001G212300--Sobic003G191700 Sobic001G212300--Sobic009G038900 Sobic001G212300--Sobic004G042200 Sobic004G355700 Sobic004G355700 Sobic001G212300--Sobic004G355700 Sobic001G212300--Sobic001G381600 Sobic003G313300 Sobic003G313300 Sobic001G212300--Sobic003G313300 Sobic007G198300 Sobic007G198300 Sobic001G212300--Sobic007G198300 Sobic001G374100 Sobic001G374100 Sobic001G212300--Sobic001G374100
Octagon: transcription factors


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