Gene annotation
Transcriptome id Sobic.001G212300.1
Synonym Sb01g018770, ATM1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
myosin-2 heavy chain, non muscle, putative, expressed
UniProt C5WXH3
Pfam PF00612 PF00063
Panther DB PTHR13140 PTHR13140:SF384
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016459myosin complex GO:0005524ATP binding GO:0003774motor activity


Orthologs (automatic annotation)
TAIR AT3G19960 : myosin 1
RAP-DB (Rice) LOC_Os10g34710.1 : myosin-2 heavy chain, non muscle, putative, expressed
MaizeGDB (Corn) Zm00025a017549 , Zm00025a006522
Brachypodium KQJ97208 , PNT67604
Barley HORVU1Hr1G043440.8 , HORVU1Hr1G043440.9 , HORVU1Hr1G043440.2 , HORVU1Hr1G043440.3 , HORVU1Hr1G043440.1 , HORVU1Hr1G043440.6 , HORVU1Hr1G043440.7 , HORVU1Hr1G043440.4 , HORVU1Hr1G043440.5 , HORVU1Hr1G043440.10 , HORVU1Hr1G043440.11 , HORVU1Hr1G043440.12
Wheat TraesCS1B02G179500 , TraesCS1B02G179500 , TraesCS1B02G179500 , TraesCS1A02G162800 , TraesCS1A02G162800 , TraesCS1D02G159600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G151100 protein kinase domain containing protein, expressed -
2 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
3 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
4 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
5 Sobic.004G355700 C2 domain containing protein, putative, expressed -
6 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
7 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
8 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
10 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
11 Sobic.002G151300 - -
12 Sobic.003G253600 protein kinase domain containing protein, expressed -
13 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
14 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
15 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
16 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
17 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
18 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
19 Sobic.002G344000 expressed protein -
20 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha


Gene co-expression network
sample Sobic001G212300 Sobic001G212300 Sobic008G151100 Sobic008G151100 Sobic001G212300--Sobic008G151100 Sobic003G191700 Sobic003G191700 Sobic001G212300--Sobic003G191700 Sobic009G038900 Sobic009G038900 Sobic001G212300--Sobic009G038900 Sobic004G042200 Sobic004G042200 Sobic001G212300--Sobic004G042200 Sobic004G355700 Sobic004G355700 Sobic001G212300--Sobic004G355700 Sobic001G381600 Sobic001G381600 Sobic001G212300--Sobic001G381600 Sobic003G313300 Sobic003G313300 Sobic001G212300--Sobic003G313300 Sobic007G198300 Sobic007G198300 Sobic001G212300--Sobic007G198300 Sobic001G374100 Sobic001G374100 Sobic001G212300--Sobic001G374100 Sobic003G198800 Sobic003G198800 Sobic008G151100--Sobic003G198800 Sobic008G151100--Sobic001G381600 Sobic008G151100--Sobic001G212300 Sobic008G151100--Sobic003G191700 Sobic009G238000 Sobic009G238000 Sobic008G151100--Sobic009G238000 Sobic005G045000 Sobic005G045000 Sobic008G151100--Sobic005G045000 Sobic010G097600 Sobic010G097600 Sobic008G151100--Sobic010G097600 Sobic003G229300 Sobic003G229300 Sobic008G151100--Sobic003G229300 Sobic008G151100--Sobic007G198300 Sobic003G191700--Sobic004G042200 Sobic003G191700--Sobic003G313300 Sobic006G133900 Sobic006G133900 Sobic003G191700--Sobic006G133900 Sobic003G191700--Sobic003G229300 Sobic003G017100 Sobic003G017100 Sobic003G191700--Sobic003G017100 Sobic003G191700--Sobic009G038900 Sobic003G191700--Sobic007G198300 Sobic003G155100 Sobic003G155100 Sobic003G191700--Sobic003G155100 Sobic010G002700 Sobic010G002700 Sobic003G191700--Sobic010G002700 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic003G271400 Sobic003G271400 Sobic004G355700--Sobic003G271400 Sobic004G355700--Sobic001G212300 Sobic004G337400 Sobic004G337400 Sobic004G355700--Sobic004G337400 Sobic004G355700--Sobic004G042200 Sobic005G198000 Sobic005G198000 Sobic004G355700--Sobic005G198000 Sobic008G168300 Sobic008G168300 Sobic004G355700--Sobic008G168300 Sobic003G276300 Sobic003G276300 Sobic004G355700--Sobic003G276300 Sobic004G355700--Sobic005G106600 Sobic004G355700--Sobic003G191700 Sobic001G381600--Sobic008G151100 Sobic009G201300 Sobic009G201300 Sobic001G381600--Sobic009G201300 Sobic001G381600--Sobic007G198300 Sobic006G002300 Sobic006G002300 Sobic001G381600--Sobic006G002300 Sobic003G115900 Sobic003G115900 Sobic001G381600--Sobic003G115900 Sobic001G381600--Sobic001G212300 Sobic001G381600--Sobic009G038900 Sobic001G381600--Sobic003G198800 Sobic001G381600--Sobic003G155100 Sobic003G313300--Sobic003G017100 Sobic003G313300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic004G028500 Sobic004G028500 Sobic003G313300--Sobic004G028500 Sobic001G017300 Sobic001G017300 Sobic003G313300--Sobic001G017300 Sobic001G468700 Sobic001G468700 Sobic003G313300--Sobic001G468700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic001G375100 Sobic001G375100 Sobic007G198300--Sobic001G375100 Sobic007G198300--Sobic003G155100 Sobic008G130100 Sobic008G130100 Sobic007G198300--Sobic008G130100 Sobic007G198300--Sobic003G191700 Sobic007G198300--Sobic009G038900 Sobic007G198300--Sobic003G229300 Sobic006G219600 Sobic006G219600 Sobic007G198300--Sobic006G219600 Sobic007G198300--Sobic006G133900 Sobic007G198300--Sobic001G381600 Sobic008G044100 Sobic008G044100 Sobic001G374100--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic001G374100--Sobic004G134200 Sobic010G010700 Sobic010G010700 Sobic001G374100--Sobic010G010700 Sobic001G374100--Sobic003G155100 Sobic006G252900 Sobic006G252900 Sobic001G374100--Sobic006G252900 Sobic003G011300 Sobic003G011300 Sobic001G374100--Sobic003G011300 Sobic008G001200 Sobic008G001200 Sobic001G374100--Sobic008G001200 Sobic006G259800 Sobic006G259800 Sobic001G374100--Sobic006G259800 Sobic001G456900 Sobic001G456900 Sobic001G374100--Sobic001G456900
Octagon: transcription factors


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