Gene annotation
Transcriptome id Sobic.004G355700.1
Synonym NTMC2T5.2, NTMC2TYPE5.2, Sb04g038220
Functional annotation C2 domain containing protein, putative, expressed
UniProt C5XWQ0
Pfam PF00168
Panther DB PTHR10774 PTHR10774:SF82
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G19830 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os02g58230.1 : C2 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032713
Brachypodium KQK02113
Barley HORVU6Hr1G094190.4 , HORVU6Hr1G094190.3 , HORVU6Hr1G094190.2 , HORVU6Hr1G094190.1 , HORVU0Hr1G018000.2 , HORVU0Hr1G018000.1
Wheat TraesCS6A02G413700 , TraesCS6D02G398300 , TraesCS6B02G463000
Populus -


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cDNA sequences
Sobic.004G355700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.001G212300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myosin-2 heavy chain, non muscle, putative, expressed -
3 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
4 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
5 Sobic.005G198000 armadillo/beta-catenin-like repeat family protein, expressed -
6 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
7 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
8 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
10 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
11 Sobic.002G344000 expressed protein -
12 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
14 Sobic.001G514800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
15 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
16 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
17 Sobic.010G002700 expressed protein -
18 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
19 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2


Gene co-expression network
sample Sobic004G355700 Sobic004G355700 Sobic003G271400 Sobic003G271400 Sobic004G355700--Sobic003G271400 Sobic001G212300 Sobic001G212300 Sobic004G355700--Sobic001G212300 Sobic004G337400 Sobic004G337400 Sobic004G355700--Sobic004G337400 Sobic004G042200 Sobic004G042200 Sobic004G355700--Sobic004G042200 Sobic005G198000 Sobic005G198000 Sobic004G355700--Sobic005G198000 Sobic008G168300 Sobic008G168300 Sobic004G355700--Sobic008G168300 Sobic003G276300 Sobic003G276300 Sobic004G355700--Sobic003G276300 Sobic005G106600 Sobic005G106600 Sobic004G355700--Sobic005G106600 Sobic003G191700 Sobic003G191700 Sobic004G355700--Sobic003G191700 Sobic007G227100 Sobic007G227100 Sobic003G271400--Sobic007G227100 Sobic004G312600 Sobic004G312600 Sobic003G271400--Sobic004G312600 Sobic004G069000 Sobic004G069000 Sobic003G271400--Sobic004G069000 Sobic003G003450 Sobic003G003450 Sobic003G271400--Sobic003G003450 Sobic003G271400--Sobic004G337400 Sobic004G127800 Sobic004G127800 Sobic003G271400--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic003G271400--Sobic008G038500 Sobic004G151300 Sobic004G151300 Sobic003G271400--Sobic004G151300 Sobic010G150100 Sobic010G150100 Sobic003G271400--Sobic010G150100 Sobic008G151100 Sobic008G151100 Sobic001G212300--Sobic008G151100 Sobic001G212300--Sobic003G191700 Sobic009G038900 Sobic009G038900 Sobic001G212300--Sobic009G038900 Sobic001G212300--Sobic004G042200 Sobic001G212300--Sobic004G355700 Sobic001G381600 Sobic001G381600 Sobic001G212300--Sobic001G381600 Sobic003G313300 Sobic003G313300 Sobic001G212300--Sobic003G313300 Sobic007G198300 Sobic007G198300 Sobic001G212300--Sobic007G198300 Sobic001G374100 Sobic001G374100 Sobic001G212300--Sobic001G374100 Sobic007G136200 Sobic007G136200 Sobic004G337400--Sobic007G136200 Sobic001G378100 Sobic001G378100 Sobic004G337400--Sobic001G378100 Sobic006G232600 Sobic006G232600 Sobic004G337400--Sobic006G232600 Sobic004G019800 Sobic004G019800 Sobic004G337400--Sobic004G019800 Sobic003G077700 Sobic003G077700 Sobic004G337400--Sobic003G077700 Sobic010G002700 Sobic010G002700 Sobic004G337400--Sobic010G002700 Sobic004G337400--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic004G337400--Sobic005G084500 Sobic010G043800 Sobic010G043800 Sobic004G337400--Sobic010G043800 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic003G155100 Sobic003G155100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic004G042200--Sobic005G106600 Sobic006G133900 Sobic006G133900 Sobic004G042200--Sobic006G133900 Sobic002G170200 Sobic002G170200 Sobic005G198000--Sobic002G170200 Sobic005G198000--Sobic004G355700 Sobic002G408200 Sobic002G408200 Sobic005G198000--Sobic002G408200 Sobic001G085600 Sobic001G085600 Sobic005G198000--Sobic001G085600 Sobic005G198000--Sobic008G168300 Sobic002G121600 Sobic002G121600 Sobic005G198000--Sobic002G121600 Sobic001G283600 Sobic001G283600 Sobic005G198000--Sobic001G283600 Sobic005G198000--Sobic010G243900 Sobic010G032900 Sobic010G032900 Sobic005G198000--Sobic010G032900 Sobic008G168300--Sobic004G355700 Sobic001G017300 Sobic001G017300 Sobic008G168300--Sobic001G017300 Sobic008G168300--Sobic002G121600 Sobic005G045000 Sobic005G045000 Sobic008G168300--Sobic005G045000 Sobic003G229300 Sobic003G229300 Sobic008G168300--Sobic003G229300 Sobic001G468700 Sobic001G468700 Sobic008G168300--Sobic001G468700 Sobic010G085100 Sobic010G085100 Sobic008G168300--Sobic010G085100 Sobic001G239500 Sobic001G239500 Sobic008G168300--Sobic001G239500 Sobic001G514800 Sobic001G514800 Sobic008G168300--Sobic001G514800 Sobic003G276300--Sobic010G002700 Sobic003G276300--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic003G276300--Sobic003G017100 Sobic003G247400 Sobic003G247400 Sobic003G276300--Sobic003G247400 Sobic006G142600 Sobic006G142600 Sobic003G276300--Sobic006G142600 Sobic001G169900 Sobic001G169900 Sobic003G276300--Sobic001G169900 Sobic003G276300--Sobic010G043800 Sobic001G198100 Sobic001G198100 Sobic003G276300--Sobic001G198100 Sobic003G276300--Sobic007G136200 Sobic005G106600--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic005G106600--Sobic007G136200 Sobic006G219600 Sobic006G219600 Sobic005G106600--Sobic006G219600 Sobic005G106600--Sobic001G378100 Sobic003G191700--Sobic004G042200 Sobic003G191700--Sobic003G313300 Sobic003G191700--Sobic006G133900 Sobic003G191700--Sobic003G229300 Sobic003G191700--Sobic003G017100 Sobic003G191700--Sobic009G038900 Sobic003G191700--Sobic007G198300 Sobic003G191700--Sobic003G155100 Sobic003G191700--Sobic010G002700
Octagon: transcription factors


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