Gene annotation
Transcriptome id Sobic.001G514800.1
Synonym Sb01g048040, ATSERAT3, SERAT3, 2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
serine acetyltransferase protein, putative, expressed
UniProt C5WZ15
Pfam PF00132 PF06426
Panther DB PTHR23416 PTHR23416:SF63
NCBI CDD KOG4750; Serine O-acetyltransferase
KEGG Orthology K00640; serine O-acetyltransferase
Gene Ontology GO:0009001; serine O-acetyltransferase activity GO:0006535cysteine biosynthetic process from serine GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT4G35640 : serine acetyltransferase 3;2
RAP-DB (Rice) LOC_Os03g04140.1 : serine acetyltransferase protein, putative, expressed
MaizeGDB (Corn) Zm00025a000476
Brachypodium KQK23790
Barley HORVU4Hr1G081310.11 , HORVU4Hr1G081310.10 , HORVU4Hr1G081310.13 , HORVU4Hr1G081310.12 , HORVU4Hr1G081310.15 , HORVU4Hr1G081310.14 , HORVU4Hr1G081310.17 , HORVU4Hr1G081310.16 , HORVU4Hr1G081310.9 , HORVU4Hr1G081310.8 , HORVU4Hr1G081310.5 , HORVU4Hr1G081310.4 , HORVU4Hr1G081310.7 , HORVU4Hr1G081310.6 , HORVU4Hr1G081310.1 , HORVU4Hr1G081310.3 , HORVU4Hr1G081310.2
Wheat TraesCS4B02G330300 , TraesCS4B02G330300 , TraesCS4D02G327200 , TraesCS4D02G327200 , TraesCS5A02G501800
Populus -


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cDNA sequences
Sobic.001G514800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
2 Sobic.001G239500 starch synthase, putative, expressed K00703: starch synthase
3 Sobic.002G172700 Galactose mutarotase-like superfamily protein(PubMedID : 26465154)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
4 Sobic.009G054900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@relA-SpoT like protein RSH4, putative, expressed -
5 Sobic.001G020100 expressed protein -
6 Sobic.004G035900 expressed protein -
7 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
8 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.007G136200 expressed protein -
10 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
11 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
12 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
13 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
14 Sobic.004G328000 snf1-related kinase interactor 2, putative, expressed -
15 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
16 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
17 Sobic.001G178250 - -
18 Sobic.003G005000 expressed protein -
19 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
20 Sobic.002G077100 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase


Gene co-expression network
sample Sobic001G514800 Sobic001G514800 Sobic001G017300 Sobic001G017300 Sobic001G514800--Sobic001G017300 Sobic001G239500 Sobic001G239500 Sobic001G514800--Sobic001G239500 Sobic002G172700 Sobic002G172700 Sobic001G514800--Sobic002G172700 Sobic009G054900 Sobic009G054900 Sobic001G514800--Sobic009G054900 Sobic001G020100 Sobic001G020100 Sobic001G514800--Sobic001G020100 Sobic004G035900 Sobic004G035900 Sobic001G514800--Sobic004G035900 Sobic006G130300 Sobic006G130300 Sobic001G514800--Sobic006G130300 Sobic004G356400 Sobic004G356400 Sobic001G514800--Sobic004G356400 Sobic007G136200 Sobic007G136200 Sobic001G514800--Sobic007G136200 Sobic006G158100 Sobic006G158100 Sobic001G017300--Sobic006G158100 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic005G101200 Sobic005G101200 Sobic001G017300--Sobic005G101200 Sobic001G169900 Sobic001G169900 Sobic001G017300--Sobic001G169900 Sobic010G002700 Sobic010G002700 Sobic001G017300--Sobic010G002700 Sobic004G343500 Sobic004G343500 Sobic001G239500--Sobic004G343500 Sobic002G273300 Sobic002G273300 Sobic001G239500--Sobic002G273300 Sobic001G239500--Sobic001G514800 Sobic008G168300 Sobic008G168300 Sobic001G239500--Sobic008G168300 Sobic003G004200 Sobic003G004200 Sobic001G239500--Sobic003G004200 Sobic001G239500--Sobic009G054900 Sobic001G207700 Sobic001G207700 Sobic001G239500--Sobic001G207700 Sobic009G249600 Sobic009G249600 Sobic001G239500--Sobic009G249600 Sobic007G047400 Sobic007G047400 Sobic001G239500--Sobic007G047400 Sobic002G172700--Sobic007G136200 Sobic010G153900 Sobic010G153900 Sobic002G172700--Sobic010G153900 Sobic007G140800 Sobic007G140800 Sobic002G172700--Sobic007G140800 Sobic003G024300 Sobic003G024300 Sobic002G172700--Sobic003G024300 Sobic008G115900 Sobic008G115900 Sobic002G172700--Sobic008G115900 Sobic009G104800 Sobic009G104800 Sobic002G172700--Sobic009G104800 Sobic004G125700 Sobic004G125700 Sobic002G172700--Sobic004G125700 Sobic002G172700--Sobic001G514800 Sobic001G468700 Sobic001G468700 Sobic002G172700--Sobic001G468700 Sobic001G329400 Sobic001G329400 Sobic009G054900--Sobic001G329400 Sobic010G251700 Sobic010G251700 Sobic009G054900--Sobic010G251700 Sobic009G054900--Sobic004G343500 Sobic009G054900--Sobic007G140800 Sobic001G178250 Sobic001G178250 Sobic009G054900--Sobic001G178250 Sobic009G054900--Sobic004G356400 Sobic009G054900--Sobic006G130300 Sobic009G054900--Sobic001G514800 Sobic009G054900--Sobic006G093800 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic003G005000 Sobic003G005000 Sobic004G035900--Sobic003G005000 Sobic001G283100 Sobic001G283100 Sobic004G035900--Sobic001G283100 Sobic001G485100 Sobic001G485100 Sobic004G035900--Sobic001G485100 Sobic003G003450 Sobic003G003450 Sobic004G035900--Sobic003G003450 Sobic001G331600 Sobic001G331600 Sobic004G035900--Sobic001G331600 Sobic007G157300 Sobic007G157300 Sobic004G035900--Sobic007G157300 Sobic008G149100 Sobic008G149100 Sobic004G035900--Sobic008G149100 Sobic001G015200 Sobic001G015200 Sobic004G035900--Sobic001G015200 Sobic003G228300 Sobic003G228300 Sobic004G035900--Sobic003G228300 Sobic006G130300--Sobic001G100000 Sobic006G130300--Sobic006G238200 Sobic006G130300--Sobic007G140800 Sobic006G130300--Sobic001G020100 Sobic006G130300--Sobic001G329400 Sobic006G130300--Sobic001G491000 Sobic004G283100 Sobic004G283100 Sobic006G130300--Sobic004G283100 Sobic006G130300--Sobic008G115900 Sobic006G207800 Sobic006G207800 Sobic006G130300--Sobic006G207800 Sobic004G356400--Sobic001G017300 Sobic004G356400--Sobic005G101200 Sobic004G356400--Sobic006G158100 Sobic003G185900 Sobic003G185900 Sobic004G356400--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G189800 Sobic004G189800 Sobic004G356400--Sobic004G189800 Sobic001G258200 Sobic001G258200 Sobic004G356400--Sobic001G258200 Sobic007G136200--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic007G136200--Sobic010G043800 Sobic001G504400 Sobic001G504400 Sobic007G136200--Sobic001G504400 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic001G378100 Sobic001G378100 Sobic007G136200--Sobic001G378100
Octagon: transcription factors


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