Gene annotation
| Transcriptome id | Sobic.001G097100.4,Sobic.001G097100.3 |
|---|---|
| Synonym | SHM1, STM, STM , SHM1, SHMT1, Sb01g008690 |
| Functional annotation | - (PubMedID : 26976818) serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed |
| UniProt | A0A1Z5S503 |
| Pfam | PF00464 |
| Panther DB | PTHR11680 PTHR11680:SF10 |
| NCBI CDD | - |
| KEGG Orthology | K00600; glyA, glycine hydroxymethyltransferase |
| Gene Ontology | GO:0016740; transferase activity |
Orthologs (automatic annotation)
| TAIR | AT4G37930 : serine transhydroxymethyltransferase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g52840.1 : serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008063 , Zm00025a039535 , Zm00025a014491 |
| Brachypodium | KQK13310 |
| Barley | HORVU4Hr1G011500.9 , HORVU4Hr1G011500.8 , HORVU4Hr1G011500.3 , HORVU4Hr1G011500.5 , HORVU4Hr1G011500.4 , HORVU4Hr1G011500.6 , HORVU4Hr1G011500.1 , HORVU4Hr1G011500.11 , HORVU4Hr1G011500.10 , HORVU4Hr1G011500.7 |
| Wheat | TraesCS4D02G068100 , TraesCS4B02G069300 , TraesCS4A02G246100 |
| Populus | - |
JBrowse
| Sobic.001G097100 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G085100 | geminivirus Rep-interacting motor protein, putative, expressed | - |
| 2 | Sobic.010G067100 | glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 3 | Sobic.003G185900 | protein phosphatase 2C, putative, expressed | - |
| 4 | Sobic.008G033000 | CAAX amino terminal protease family protein, putative, expressed | K07052: uncharacterized protein |
| 5 | Sobic.004G154200 | expressed protein | - |
| 6 | Sobic.002G091600 | methyltransferase, putative, expressed | - |
| 7 | Sobic.005G126300 | expressed protein | - |
| 8 | Sobic.003G332700 | Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 9 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 10 | Sobic.008G001900 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 11 | Sobic.004G215800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed | K04354: serine/threonine-protein phosphatase 2A regulatory subunit B |
| 12 | Sobic.007G136200 | expressed protein | - |
| 13 | Sobic.002G402700 | -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed | K00284: GLU, glutamate synthase (ferredoxin) |
| 14 | Sobic.001G504400 | expressed protein | - |
| 15 | Sobic.005G001700 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 16 | Sobic.009G121000 | expressed protein | - |
| 17 | Sobic.003G398800 | expressed protein | - |
| 18 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 19 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 20 | Sobic.001G217900 | PPR repeat domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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