Gene annotation
Transcriptome id Sobic.001G244700.1
Synonym
Functional annotation RIO1 family protein, expressed
UniProt A0A1B6QKP5
Pfam PF00069 PF01535
Panther DB PTHR12209
NCBI CDD KOG3087; Serine/threonine protein kinase
KEGG Orthology K08851; TP53RK, PRPK, TP53 regulating kinase and related kinases
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity GO:0004674protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G26110 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os10g28640.1 : RIO1 family protein, expressed
MaizeGDB (Corn) Zm00025a055169 , Zm00025a017769 , Zm00025a006897 , Zm00025a019932
Brachypodium KQK10864
Barley HORVU4Hr1G025220.2 , HORVU4Hr1G025220.1 , HORVU3Hr1G081750.4 , HORVU3Hr1G081750.2 , HORVU3Hr1G081750.3 , HORVU3Hr1G081750.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
2 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
3 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
4 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
5 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
6 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
7 Sobic.006G259800 inducer of CBF expression 2, putative, expressed -
8 Sobic.003G260100 - -
9 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
10 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G402700 -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed K00284: GLU, glutamate synthase (ferredoxin)
14 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
15 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
16 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
17 Sobic.004G322700 - -
18 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
19 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase


Gene co-expression network
sample Sobic001G244700 Sobic001G244700 Sobic002G404800 Sobic002G404800 Sobic001G244700--Sobic002G404800 Sobic002G196600 Sobic002G196600 Sobic001G244700--Sobic002G196600 Sobic009G038900 Sobic009G038900 Sobic001G244700--Sobic009G038900 Sobic001G244600 Sobic001G244600 Sobic001G244700--Sobic001G244600 Sobic001G217900 Sobic001G217900 Sobic001G244700--Sobic001G217900 Sobic010G085100 Sobic010G085100 Sobic001G244700--Sobic010G085100 Sobic006G259800 Sobic006G259800 Sobic001G244700--Sobic006G259800 Sobic003G260100 Sobic003G260100 Sobic001G244700--Sobic003G260100 Sobic008G033000 Sobic008G033000 Sobic001G244700--Sobic008G033000 Sobic007G105500 Sobic007G105500 Sobic002G404800--Sobic007G105500 Sobic003G036200 Sobic003G036200 Sobic002G404800--Sobic003G036200 Sobic004G215800 Sobic004G215800 Sobic002G404800--Sobic004G215800 Sobic005G101200 Sobic005G101200 Sobic002G404800--Sobic005G101200 Sobic002G390100 Sobic002G390100 Sobic002G404800--Sobic002G390100 Sobic009G256100 Sobic009G256100 Sobic002G404800--Sobic009G256100 Sobic003G185900 Sobic003G185900 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic002G196600--Sobic002G390100 Sobic006G093100 Sobic006G093100 Sobic002G196600--Sobic006G093100 Sobic010G231300 Sobic010G231300 Sobic002G196600--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic002G196600--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G196600--Sobic002G219300 Sobic001G073300 Sobic001G073300 Sobic002G196600--Sobic001G073300 Sobic002G196600--Sobic001G244700 Sobic002G196600--Sobic002G404800 Sobic006G161500 Sobic006G161500 Sobic002G196600--Sobic006G161500 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100 Sobic008G129900 Sobic008G129900 Sobic001G244600--Sobic008G129900 Sobic010G104800 Sobic010G104800 Sobic001G244600--Sobic010G104800 Sobic001G244600--Sobic006G161500 Sobic001G244600--Sobic009G256100 Sobic001G244600--Sobic001G073300 Sobic007G058100 Sobic007G058100 Sobic001G244600--Sobic007G058100 Sobic001G244600--Sobic001G217900 Sobic008G038500 Sobic008G038500 Sobic001G244600--Sobic008G038500 Sobic001G244600--Sobic010G231300 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G258200 Sobic001G258200 Sobic001G217900--Sobic001G258200 Sobic002G206300 Sobic002G206300 Sobic001G217900--Sobic002G206300 Sobic001G263100 Sobic001G263100 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200 Sobic001G374100 Sobic001G374100 Sobic006G259800--Sobic001G374100 Sobic006G259800--Sobic009G038900 Sobic006G259800--Sobic001G244700 Sobic001G530900 Sobic001G530900 Sobic006G259800--Sobic001G530900 Sobic004G244900 Sobic004G244900 Sobic006G259800--Sobic004G244900 Sobic006G259800--Sobic004G042200 Sobic008G044100 Sobic008G044100 Sobic006G259800--Sobic008G044100 Sobic001G519900 Sobic001G519900 Sobic006G259800--Sobic001G519900 Sobic003G155100 Sobic003G155100 Sobic006G259800--Sobic003G155100 Sobic002G162400 Sobic002G162400 Sobic003G260100--Sobic002G162400 Sobic003G260100--Sobic008G129900 Sobic003G260100--Sobic001G263100 Sobic003G260100--Sobic002G206300 Sobic003G260100--Sobic001G217900 Sobic001G077300 Sobic001G077300 Sobic003G260100--Sobic001G077300 Sobic003G260100--Sobic001G244700 Sobic009G103000 Sobic009G103000 Sobic003G260100--Sobic009G103000 Sobic003G260100--Sobic010G231300 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic008G033000--Sobic002G206300 Sobic008G033000--Sobic004G215800 Sobic009G038701 Sobic009G038701 Sobic008G033000--Sobic009G038701
Octagon: transcription factors


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