Gene annotation
Transcriptome id Sobic.004G182900.1
Synonym AL3, Sb04g023220
Functional annotation PHD finger protein, putative, expressed
UniProt C5XUZ7
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF49
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G42790 : alfin-like 3
RAP-DB (Rice) LOC_Os02g35600.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a020727 , Zm00025a031651
Brachypodium KQK15297 , KQJ99935 , KQK15296
Barley HORVU2Hr1G031990.6 , HORVU2Hr1G031990.7 , HORVU2Hr1G031990.4 , HORVU2Hr1G031990.5 , HORVU2Hr1G031990.2 , HORVU2Hr1G031990.3 , HORVU2Hr1G031990.1 , HORVU2Hr1G031990.8 , HORVU2Hr1G031990.9 , HORVU2Hr1G031990.14 , HORVU2Hr1G031990.15 , HORVU2Hr1G031990.16 , HORVU2Hr1G031990.11 , HORVU2Hr1G031990.12 , HORVU2Hr1G031990.13
Wheat TraesCS2D02G179400 , TraesCS2D02G179400 , TraesCS4A02G227900 , TraesCS2B02G198500 , TraesCS2B02G198500 , TraesCS2A02G172100 , TraesCS2A02G172100
Populus -


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cDNA sequences
Sobic.004G182900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G294700 F-box family protein, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
2 Sobic.009G191100 expressed protein -
3 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
4 Sobic.004G178100 uncharacterized oxidoreductase yoxD, putative, expressed -
5 Sobic.006G031800 - -
6 Sobic.004G183000 - -
7 Sobic.002G358500 - -
8 Sobic.010G016900 calcium-dependent protein kinase isoform AK1, putative, expressed K13412: calcium-dependent protein kinase
9 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
10 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
11 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
12 Sobic.003G442700 - -
13 Sobic.001G098301 - -
14 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
15 Sobic.002G359600 GA22009-PA, putative, expressed -
16 Sobic.006G181000 -(PubMedID : 23915383)@PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
17 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
18 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
19 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
20 Sobic.010G176550 - -


Gene co-expression network
sample Sobic004G182900 Sobic004G182900 Sobic004G294700 Sobic004G294700 Sobic004G182900--Sobic004G294700 Sobic009G191100 Sobic009G191100 Sobic004G182900--Sobic009G191100 Sobic007G136800 Sobic007G136800 Sobic004G182900--Sobic007G136800 Sobic004G178100 Sobic004G178100 Sobic004G182900--Sobic004G178100 Sobic006G031800 Sobic006G031800 Sobic004G182900--Sobic006G031800 Sobic004G183000 Sobic004G183000 Sobic004G182900--Sobic004G183000 Sobic002G358500 Sobic002G358500 Sobic004G182900--Sobic002G358500 Sobic010G016900 Sobic010G016900 Sobic004G182900--Sobic010G016900 Sobic010G043800 Sobic010G043800 Sobic004G182900--Sobic010G043800 Sobic001G465700 Sobic001G465700 Sobic004G294700--Sobic001G465700 Sobic002G145000 Sobic002G145000 Sobic004G294700--Sobic002G145000 Sobic004G294700--Sobic004G182900 Sobic003G168100 Sobic003G168100 Sobic004G294700--Sobic003G168100 Sobic004G294700--Sobic006G031800 Sobic006G271800 Sobic006G271800 Sobic004G294700--Sobic006G271800 Sobic006G181000 Sobic006G181000 Sobic004G294700--Sobic006G181000 Sobic004G294700--Sobic007G136800 Sobic001G043800 Sobic001G043800 Sobic004G294700--Sobic001G043800 Sobic009G191100--Sobic002G358500 Sobic002G121600 Sobic002G121600 Sobic009G191100--Sobic002G121600 Sobic007G113800 Sobic007G113800 Sobic009G191100--Sobic007G113800 Sobic009G191100--Sobic004G182900 Sobic004G299000 Sobic004G299000 Sobic009G191100--Sobic004G299000 Sobic002G031600 Sobic002G031600 Sobic009G191100--Sobic002G031600 Sobic007G173200 Sobic007G173200 Sobic009G191100--Sobic007G173200 Sobic002G228700 Sobic002G228700 Sobic009G191100--Sobic002G228700 Sobic004G258700 Sobic004G258700 Sobic009G191100--Sobic004G258700 Sobic003G398700 Sobic003G398700 Sobic007G136800--Sobic003G398700 Sobic010G126000 Sobic010G126000 Sobic007G136800--Sobic010G126000 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic002G000600 Sobic002G000600 Sobic004G178100--Sobic002G000600 Sobic002G020400 Sobic002G020400 Sobic004G178100--Sobic002G020400 Sobic004G178100--Sobic010G043800 Sobic006G173600 Sobic006G173600 Sobic004G178100--Sobic006G173600 Sobic006G158100 Sobic006G158100 Sobic004G178100--Sobic006G158100 Sobic001G198100 Sobic001G198100 Sobic004G178100--Sobic001G198100 Sobic003G247400 Sobic003G247400 Sobic004G178100--Sobic003G247400 Sobic004G337400 Sobic004G337400 Sobic004G178100--Sobic004G337400 Sobic001G516901 Sobic001G516901 Sobic004G178100--Sobic001G516901 Sobic009G215500 Sobic009G215500 Sobic006G031800--Sobic009G215500 Sobic006G031800--Sobic001G465700 Sobic006G031800--Sobic007G136800 Sobic006G031800--Sobic003G168100 Sobic003G217700 Sobic003G217700 Sobic006G031800--Sobic003G217700 Sobic003G110800 Sobic003G110800 Sobic006G031800--Sobic003G110800 Sobic006G128300 Sobic006G128300 Sobic006G031800--Sobic006G128300 Sobic006G038500 Sobic006G038500 Sobic006G031800--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic006G031800--Sobic002G218500 Sobic004G183000--Sobic001G198100 Sobic010G002700 Sobic010G002700 Sobic004G183000--Sobic010G002700 Sobic004G183000--Sobic010G043800 Sobic001G169900 Sobic001G169900 Sobic004G183000--Sobic001G169900 Sobic004G042200 Sobic004G042200 Sobic004G183000--Sobic004G042200 Sobic001G378100 Sobic001G378100 Sobic004G183000--Sobic001G378100 Sobic001G298900 Sobic001G298900 Sobic004G183000--Sobic001G298900 Sobic004G183000--Sobic006G158100 Sobic007G058001 Sobic007G058001 Sobic004G183000--Sobic007G058001 Sobic002G358500--Sobic009G191100 Sobic004G359700 Sobic004G359700 Sobic002G358500--Sobic004G359700 Sobic002G358500--Sobic002G121600 Sobic002G358500--Sobic007G113800 Sobic002G000700 Sobic002G000700 Sobic002G358500--Sobic002G000700 Sobic001G060401 Sobic001G060401 Sobic002G358500--Sobic001G060401 Sobic004G112600 Sobic004G112600 Sobic002G358500--Sobic004G112600 Sobic001G468700 Sobic001G468700 Sobic002G358500--Sobic001G468700 Sobic002G343901 Sobic002G343901 Sobic002G358500--Sobic002G343901 Sobic001G420500 Sobic001G420500 Sobic010G016900--Sobic001G420500 Sobic010G016900--Sobic004G182900 Sobic010G016900--Sobic009G191100 Sobic010G016900--Sobic006G181000 Sobic002G233900 Sobic002G233900 Sobic010G016900--Sobic002G233900 Sobic002G402600 Sobic002G402600 Sobic010G016900--Sobic002G402600 Sobic010G016900--Sobic001G375700 Sobic003G257700 Sobic003G257700 Sobic010G016900--Sobic003G257700 Sobic002G418200 Sobic002G418200 Sobic010G016900--Sobic002G418200 Sobic009G121000 Sobic009G121000 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic001G504400 Sobic001G504400 Sobic010G043800--Sobic001G504400 Sobic006G142600 Sobic006G142600 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic010G043800--Sobic006G158100 Sobic007G103400 Sobic007G103400 Sobic010G043800--Sobic007G103400 Sobic010G043800--Sobic001G169900 Sobic010G043800--Sobic001G378100
Octagon: transcription factors


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