Gene annotation
Transcriptome id Sobic.006G181000.1
Synonym Sb06g025560, AGO1
Functional annotation - (PubMedID : 23915383)
PINHEAD, putative, expressed
UniProt A0A1Z5RF01
Pfam PF16487 PF16488 PF08699 PF16486 PF02170 PF12764 PF02171
Panther DB PTHR22891 PTHR22891:SF34
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G48410 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os04g47870.2 : PINHEAD, putative, expressed
MaizeGDB (Corn) Zm00025a010194 , Zm00025a057453 , Zm00025a056788 , Zm00025a038290 , Zm00025a040993 , Zm00025a049457 , Zm00025a028371
Brachypodium PNT69195 , PNT69196 , KQJ84078 , PNT61672 , PNT76868 , KQK00676 , KQK00677
Barley HORVU2Hr1G031130.28 , HORVU2Hr1G031130.23 , HORVU2Hr1G031130.22 , HORVU2Hr1G031130.21 , HORVU2Hr1G031130.20 , HORVU2Hr1G031130.27 , HORVU2Hr1G031130.24 , HORVU7Hr1G007000.16 , HORVU7Hr1G007000.17 , HORVU7Hr1G007000.14 , HORVU7Hr1G007000.15 , HORVU7Hr1G007000.12 , HORVU7Hr1G007000.13 , HORVU7Hr1G007000.10 , HORVU7Hr1G007000.11 , HORVU7Hr1G007000.18 , HORVU7Hr1G007000.19 , HORVU7Hr1G120600.18 , HORVU7Hr1G120600.19 , HORVU7Hr1G120600.10 , HORVU7Hr1G120600.11 , HORVU7Hr1G120600.13 , HORVU7Hr1G120600.14 , HORVU7Hr1G120600.15 , HORVU7Hr1G120600.16 , HORVU7Hr1G120600.17 , HORVU7Hr1G007000.6 , HORVU7Hr1G007000.7 , HORVU7Hr1G007000.8 , HORVU3Hr1G009940.22 , HORVU3Hr1G009940.23 , HORVU3Hr1G009940.20 , HORVU3Hr1G009940.24 , HORVU3Hr1G009940.25 , HORVU7Hr1G007000.27 , HORVU7Hr1G007000.26 , HORVU7Hr1G007000.25 , HORVU7Hr1G007000.24 , HORVU7Hr1G007000.23 , HORVU7Hr1G007000.22 , HORVU7Hr1G007000.21 , HORVU7Hr1G007000.20 , HORVU2Hr1G031130.8 , HORVU2Hr1G031130.9 , HORVU2Hr1G031130.1 , HORVU2Hr1G031130.2 , HORVU2Hr1G031130.3 , HORVU2Hr1G031130.4 , HORVU2Hr1G031130.5 , HORVU2Hr1G031130.6 , HORVU3Hr1G009940.19 , HORVU3Hr1G009940.17 , HORVU7Hr1G120600.21 , HORVU7Hr1G120600.20 , HORVU7Hr1G120600.8 , HORVU7Hr1G120600.9 , HORVU7Hr1G120600.2 , HORVU7Hr1G120600.3 , HORVU7Hr1G120600.1 , HORVU7Hr1G120600.6 , HORVU7Hr1G120600.7 , HORVU7Hr1G120600.4 , HORVU7Hr1G120600.5 , HORVU7Hr1G007000.4 , HORVU7Hr1G007000.5 , HORVU3Hr1G009940.8 , HORVU7Hr1G007000.1 , HORVU7Hr1G007000.2 , HORVU7Hr1G007000.3 , HORVU7Hr1G007000.9 , HORVU2Hr1G031130.12 , HORVU2Hr1G031130.13 , HORVU2Hr1G031130.10 , HORVU2Hr1G031130.11 , HORVU2Hr1G031130.16 , HORVU2Hr1G031130.17 , HORVU2Hr1G031130.14 , HORVU2Hr1G031130.15 , HORVU2Hr1G031130.19
Wheat TraesCSU02G065300 , TraesCSU02G065300 , TraesCSU02G065300 , TraesCS7A02G040700 , TraesCS2D02G176500 , TraesCS2D02G176500 , TraesCS7A02G040700 , TraesCS2B02G421000 , TraesCS2B02G421000 , TraesCS7D02G553000 , TraesCS7B02G482100 , TraesCS2A02G258100 , TraesCS7D02G553200 , TraesCS2D02G400200 , TraesCS2D02G400200 , TraesCS6B02G270900 , TraesCS2A02G168900 , TraesCS2A02G168900 , TraesCS7D02G552900 , TraesCS2A02G258200 , TraesCS7A02G557400 , TraesCS7D02G036100 , TraesCS7D02G036100 , TraesCS7D02G036100 , TraesCS7D02G036100 , TraesCS2A02G403100 , TraesCS2A02G403100 , TraesCS2A02G403100 , TraesCS2A02G403100 , TraesCS2A02G403100 , TraesCS7A02G040700 , TraesCS6A02G254600 , TraesCS6A02G254600 , TraesCS7A02G040700 , TraesCS7A02G040700 , TraesCS2B02G195200 , TraesCS2B02G195200
Populus PNT00106 , PNT00105


JBrowse

Open New Page


cDNA sequences
Sobic.006G181000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G294700 F-box family protein, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
2 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.002G145000 DNA-directed RNA polymerase subunit, putative, expressed K03011: RPB3, DNA-directed RNA polymerase II subunit RPB3
4 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
5 Sobic.004G182900 PHD finger protein, putative, expressed -
6 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
7 Sobic.001G037500 expressed protein -
8 Sobic.010G016900 calcium-dependent protein kinase isoform AK1, putative, expressed K13412: calcium-dependent protein kinase
9 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
10 Sobic.010G214100 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
11 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
12 Sobic.009G002300 expressed protein -
13 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
14 Sobic.005G039700 rhoGAP domain containing protein, expressed -
15 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
16 Sobic.006G271800 potasium efflux antiporter protein, putative, expressed -
17 Sobic.001G064000 expressed protein -
18 Sobic.003G210900 protein kinase, putative, expressed -
19 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
20 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -


Gene co-expression network
sample Sobic006G181000 Sobic006G181000 Sobic004G294700 Sobic004G294700 Sobic006G181000--Sobic004G294700 Sobic002G296100 Sobic002G296100 Sobic006G181000--Sobic002G296100 Sobic002G145000 Sobic002G145000 Sobic006G181000--Sobic002G145000 Sobic007G029700 Sobic007G029700 Sobic006G181000--Sobic007G029700 Sobic004G182900 Sobic004G182900 Sobic006G181000--Sobic004G182900 Sobic002G218500 Sobic002G218500 Sobic006G181000--Sobic002G218500 Sobic001G037500 Sobic001G037500 Sobic006G181000--Sobic001G037500 Sobic010G016900 Sobic010G016900 Sobic006G181000--Sobic010G016900 Sobic008G001900 Sobic008G001900 Sobic006G181000--Sobic008G001900 Sobic001G465700 Sobic001G465700 Sobic004G294700--Sobic001G465700 Sobic004G294700--Sobic002G145000 Sobic004G294700--Sobic004G182900 Sobic003G168100 Sobic003G168100 Sobic004G294700--Sobic003G168100 Sobic006G031800 Sobic006G031800 Sobic004G294700--Sobic006G031800 Sobic006G271800 Sobic006G271800 Sobic004G294700--Sobic006G271800 Sobic004G294700--Sobic006G181000 Sobic007G136800 Sobic007G136800 Sobic004G294700--Sobic007G136800 Sobic001G043800 Sobic001G043800 Sobic004G294700--Sobic001G043800 Sobic002G042500 Sobic002G042500 Sobic002G296100--Sobic002G042500 Sobic002G296100--Sobic001G037500 Sobic002G347600 Sobic002G347600 Sobic002G296100--Sobic002G347600 Sobic004G020800 Sobic004G020800 Sobic002G296100--Sobic004G020800 Sobic003G434700 Sobic003G434700 Sobic002G296100--Sobic003G434700 Sobic004G206200 Sobic004G206200 Sobic002G296100--Sobic004G206200 Sobic006G128300 Sobic006G128300 Sobic002G296100--Sobic006G128300 Sobic002G081500 Sobic002G081500 Sobic002G296100--Sobic002G081500 Sobic001G022500 Sobic001G022500 Sobic002G296100--Sobic001G022500 Sobic002G145000--Sobic004G294700 Sobic002G145000--Sobic006G181000 Sobic002G145000--Sobic004G182900 Sobic002G145000--Sobic001G043800 Sobic004G086700 Sobic004G086700 Sobic002G145000--Sobic004G086700 Sobic007G159000 Sobic007G159000 Sobic002G145000--Sobic007G159000 Sobic003G443500 Sobic003G443500 Sobic002G145000--Sobic003G443500 Sobic002G145000--Sobic001G465700 Sobic006G260800 Sobic006G260800 Sobic002G145000--Sobic006G260800 Sobic007G029700--Sobic008G001900 Sobic001G064000 Sobic001G064000 Sobic007G029700--Sobic001G064000 Sobic007G029700--Sobic006G128300 Sobic007G029700--Sobic001G043800 Sobic006G038500 Sobic006G038500 Sobic007G029700--Sobic006G038500 Sobic007G029700--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic007G029700--Sobic009G129100 Sobic004G016400 Sobic004G016400 Sobic007G029700--Sobic004G016400 Sobic009G063100 Sobic009G063100 Sobic007G029700--Sobic009G063100 Sobic004G182900--Sobic004G294700 Sobic009G191100 Sobic009G191100 Sobic004G182900--Sobic009G191100 Sobic004G182900--Sobic007G136800 Sobic004G178100 Sobic004G178100 Sobic004G182900--Sobic004G178100 Sobic004G182900--Sobic006G031800 Sobic004G183000 Sobic004G183000 Sobic004G182900--Sobic004G183000 Sobic002G358500 Sobic002G358500 Sobic004G182900--Sobic002G358500 Sobic004G182900--Sobic010G016900 Sobic010G043800 Sobic010G043800 Sobic004G182900--Sobic010G043800 Sobic002G218500--Sobic006G128300 Sobic002G218500--Sobic006G031800 Sobic002G218500--Sobic006G038500 Sobic002G218500--Sobic001G043800 Sobic002G431300 Sobic002G431300 Sobic002G218500--Sobic002G431300 Sobic002G218500--Sobic007G029700 Sobic001G516901 Sobic001G516901 Sobic002G218500--Sobic001G516901 Sobic004G079800 Sobic004G079800 Sobic002G218500--Sobic004G079800 Sobic005G084800 Sobic005G084800 Sobic002G218500--Sobic005G084800 Sobic001G037500--Sobic002G042500 Sobic001G054100 Sobic001G054100 Sobic001G037500--Sobic001G054100 Sobic006G273400 Sobic006G273400 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic001G037500--Sobic002G296100 Sobic001G420500 Sobic001G420500 Sobic010G016900--Sobic001G420500 Sobic010G016900--Sobic004G182900 Sobic010G016900--Sobic009G191100 Sobic010G016900--Sobic006G181000 Sobic002G233900 Sobic002G233900 Sobic010G016900--Sobic002G233900 Sobic002G402600 Sobic002G402600 Sobic010G016900--Sobic002G402600 Sobic001G375700 Sobic001G375700 Sobic010G016900--Sobic001G375700 Sobic003G257700 Sobic003G257700 Sobic010G016900--Sobic003G257700 Sobic002G418200 Sobic002G418200 Sobic010G016900--Sobic002G418200 Sobic005G001700 Sobic005G001700 Sobic008G001900--Sobic005G001700 Sobic001G073900 Sobic001G073900 Sobic008G001900--Sobic001G073900 Sobic004G235600 Sobic004G235600 Sobic008G001900--Sobic004G235600 Sobic003G085100 Sobic003G085100 Sobic008G001900--Sobic003G085100 Sobic003G332700 Sobic003G332700 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic005G063000 Sobic005G063000 Sobic008G001900--Sobic005G063000 Sobic005G204200 Sobic005G204200 Sobic008G001900--Sobic005G204200 Sobic008G001900--Sobic001G465700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.