Gene annotation
Transcriptome id Sobic.002G145000.1
Synonym RPB35.5A, NRPD3, Sb02g014460, NRPB3, NRPE3A, RBP36A
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt C5X7D7
Pfam PF01193 PF01000
Panther DB PTHR11800
NCBI CDD KOG1522; RNA polymerase II, subunit POLR2C/RPB3
KEGG Orthology K03011; RPB3, DNA-directed RNA polymerase II subunit RPB3
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT2G15430 : DNA-directed RNA polymerase family protein
RAP-DB (Rice) LOC_Os09g02284.1 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a013455
Brachypodium KQJ86902
Barley HORVU7Hr1G115770.2 , HORVU7Hr1G115770.1
Wheat TraesCS5A02G160900 , TraesCS7B02G435800 , TraesCS5B02G158300 , TraesCS5D02G165800 , TraesCS5D02G165800 , TraesCS7D02G509400 , TraesCS7A02G519700
Populus -


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cDNA sequences
Sobic.002G145000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G294700 F-box family protein, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
2 Sobic.006G181000 -(PubMedID : 23915383)@PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.004G182900 PHD finger protein, putative, expressed -
4 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
5 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
6 Sobic.007G159000 heat shock protein DnaJ, putative, expressed -
7 Sobic.003G443500 cyclase/dehydrase family protein, expressed -
8 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
9 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
10 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
11 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
12 Sobic.003G210900 protein kinase, putative, expressed -
13 Sobic.002G431400 - -
14 Sobic.006G031800 - -
15 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
16 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
17 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase
18 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
19 Sobic.002G359600 GA22009-PA, putative, expressed -
20 Sobic.010G189200 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G145000 Sobic002G145000 Sobic004G294700 Sobic004G294700 Sobic002G145000--Sobic004G294700 Sobic006G181000 Sobic006G181000 Sobic002G145000--Sobic006G181000 Sobic004G182900 Sobic004G182900 Sobic002G145000--Sobic004G182900 Sobic001G043800 Sobic001G043800 Sobic002G145000--Sobic001G043800 Sobic004G086700 Sobic004G086700 Sobic002G145000--Sobic004G086700 Sobic007G159000 Sobic007G159000 Sobic002G145000--Sobic007G159000 Sobic003G443500 Sobic003G443500 Sobic002G145000--Sobic003G443500 Sobic001G465700 Sobic001G465700 Sobic002G145000--Sobic001G465700 Sobic006G260800 Sobic006G260800 Sobic002G145000--Sobic006G260800 Sobic004G294700--Sobic001G465700 Sobic004G294700--Sobic002G145000 Sobic004G294700--Sobic004G182900 Sobic003G168100 Sobic003G168100 Sobic004G294700--Sobic003G168100 Sobic006G031800 Sobic006G031800 Sobic004G294700--Sobic006G031800 Sobic006G271800 Sobic006G271800 Sobic004G294700--Sobic006G271800 Sobic004G294700--Sobic006G181000 Sobic007G136800 Sobic007G136800 Sobic004G294700--Sobic007G136800 Sobic004G294700--Sobic001G043800 Sobic006G181000--Sobic004G294700 Sobic002G296100 Sobic002G296100 Sobic006G181000--Sobic002G296100 Sobic006G181000--Sobic002G145000 Sobic007G029700 Sobic007G029700 Sobic006G181000--Sobic007G029700 Sobic006G181000--Sobic004G182900 Sobic002G218500 Sobic002G218500 Sobic006G181000--Sobic002G218500 Sobic001G037500 Sobic001G037500 Sobic006G181000--Sobic001G037500 Sobic010G016900 Sobic010G016900 Sobic006G181000--Sobic010G016900 Sobic008G001900 Sobic008G001900 Sobic006G181000--Sobic008G001900 Sobic004G182900--Sobic004G294700 Sobic009G191100 Sobic009G191100 Sobic004G182900--Sobic009G191100 Sobic004G182900--Sobic007G136800 Sobic004G178100 Sobic004G178100 Sobic004G182900--Sobic004G178100 Sobic004G182900--Sobic006G031800 Sobic004G183000 Sobic004G183000 Sobic004G182900--Sobic004G183000 Sobic002G358500 Sobic002G358500 Sobic004G182900--Sobic002G358500 Sobic004G182900--Sobic010G016900 Sobic010G043800 Sobic010G043800 Sobic004G182900--Sobic010G043800 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic001G043800--Sobic004G086700 Sobic001G043800--Sobic002G218500 Sobic001G102500 Sobic001G102500 Sobic001G043800--Sobic001G102500 Sobic001G043800--Sobic006G031800 Sobic001G043800--Sobic007G029700 Sobic001G053000 Sobic001G053000 Sobic001G043800--Sobic001G053000 Sobic002G431300 Sobic002G431300 Sobic001G043800--Sobic002G431300 Sobic004G086700--Sobic001G043800 Sobic001G069600 Sobic001G069600 Sobic004G086700--Sobic001G069600 Sobic008G051200 Sobic008G051200 Sobic004G086700--Sobic008G051200 Sobic010G265300 Sobic010G265300 Sobic004G086700--Sobic010G265300 Sobic010G186000 Sobic010G186000 Sobic004G086700--Sobic010G186000 Sobic004G086700--Sobic007G136800 Sobic009G002300 Sobic009G002300 Sobic004G086700--Sobic009G002300 Sobic003G122500 Sobic003G122500 Sobic004G086700--Sobic003G122500 Sobic002G166300 Sobic002G166300 Sobic004G086700--Sobic002G166300 Sobic008G072700 Sobic008G072700 Sobic007G159000--Sobic008G072700 Sobic007G159000--Sobic002G145000 Sobic007G159000--Sobic004G294700 Sobic009G062500 Sobic009G062500 Sobic007G159000--Sobic009G062500 Sobic004G201700 Sobic004G201700 Sobic007G159000--Sobic004G201700 Sobic004G147200 Sobic004G147200 Sobic007G159000--Sobic004G147200 Sobic001G078400 Sobic001G078400 Sobic007G159000--Sobic001G078400 Sobic003G291400 Sobic003G291400 Sobic007G159000--Sobic003G291400 Sobic002G000700 Sobic002G000700 Sobic007G159000--Sobic002G000700 Sobic002G036000 Sobic002G036000 Sobic003G443500--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic003G443500--Sobic001G391900 Sobic001G073900 Sobic001G073900 Sobic003G443500--Sobic001G073900 Sobic001G065600 Sobic001G065600 Sobic003G443500--Sobic001G065600 Sobic002G102200 Sobic002G102200 Sobic003G443500--Sobic002G102200 Sobic003G443500--Sobic008G001900 Sobic006G101500 Sobic006G101500 Sobic003G443500--Sobic006G101500 Sobic005G188600 Sobic005G188600 Sobic003G443500--Sobic005G188600 Sobic001G317400 Sobic001G317400 Sobic003G443500--Sobic001G317400 Sobic006G038500 Sobic006G038500 Sobic001G465700--Sobic006G038500 Sobic001G465700--Sobic010G043800 Sobic005G111550 Sobic005G111550 Sobic001G465700--Sobic005G111550 Sobic003G442700 Sobic003G442700 Sobic001G465700--Sobic003G442700 Sobic001G465700--Sobic008G001900 Sobic001G465700--Sobic004G294700 Sobic001G530900 Sobic001G530900 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic001G465700--Sobic006G031800 Sobic006G260800--Sobic004G298900 Sobic010G214100 Sobic010G214100 Sobic006G260800--Sobic010G214100 Sobic002G112400 Sobic002G112400 Sobic006G260800--Sobic002G112400 Sobic006G260800--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic006G260800--Sobic003G160800 Sobic009G062400 Sobic009G062400 Sobic006G260800--Sobic009G062400 Sobic005G001700 Sobic005G001700 Sobic006G260800--Sobic005G001700 Sobic004G211600 Sobic004G211600 Sobic006G260800--Sobic004G211600 Sobic009G140000 Sobic009G140000 Sobic006G260800--Sobic009G140000
Octagon: transcription factors


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