Gene annotation
Transcriptome id Sobic.001G324400.3,Sobic.001G324400.2,Sobic.001G324400.1
Synonym Sb01g031430
Functional annotation thymidine kinase, putative, expressed
UniProt A0A1Z5S8Z1 , C5WVG5 , A0A1Z5S8N9
Pfam PF00265
Panther DB PTHR11441 PTHR11441:SF2
NCBI CDD KOG3125; Thymidine kinase
KEGG Orthology K00857; tdk, thymidine kinase
Gene Ontology GO:0005524; ATP binding GO:0004797thymidine kinase activity


Orthologs (automatic annotation)
TAIR AT3G07800 : Thymidine kinase
RAP-DB (Rice) LOC_Os03g02200.2 : thymidine kinase, putative, expressed
MaizeGDB (Corn) Zm00025a003050
Brachypodium KQK21323 , KQK21324
Barley HORVU1Hr1G083370.1 , HORVU1Hr1G083370.2 , HORVU1Hr1G083370.3
Wheat TraesCS1B02G396300 , TraesCS1D02G383300 , TraesCS1A02G375900
Populus -


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cDNA sequences
Sobic.001G324400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.010G189200 pentatricopeptide, putative, expressed -
3 Sobic.004G152100 expressed protein -
4 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
5 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
6 Sobic.002G281800 expressed protein -
7 Sobic.004G287300 polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
8 Sobic.009G094800 sugar porter, putative, expressed -
9 Sobic.009G148900 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
10 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
11 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
12 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
13 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
14 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
15 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
16 Sobic.002G193400 lipase, putative, expressed K18875: enhanced disease susceptibility 1 protein
17 Sobic.004G147200 - -
18 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
20 Sobic.008G063200 expressed protein -


Gene co-expression network
sample Sobic001G324400 Sobic001G324400 Sobic003G170200 Sobic003G170200 Sobic001G324400--Sobic003G170200 Sobic010G189200 Sobic010G189200 Sobic001G324400--Sobic010G189200 Sobic004G152100 Sobic004G152100 Sobic001G324400--Sobic004G152100 Sobic001G341800 Sobic001G341800 Sobic001G324400--Sobic001G341800 Sobic001G437200 Sobic001G437200 Sobic001G324400--Sobic001G437200 Sobic002G281800 Sobic002G281800 Sobic001G324400--Sobic002G281800 Sobic004G287300 Sobic004G287300 Sobic001G324400--Sobic004G287300 Sobic009G094800 Sobic009G094800 Sobic001G324400--Sobic009G094800 Sobic009G148900 Sobic009G148900 Sobic001G324400--Sobic009G148900 Sobic001G102500 Sobic001G102500 Sobic003G170200--Sobic001G102500 Sobic007G205600 Sobic007G205600 Sobic003G170200--Sobic007G205600 Sobic008G078900 Sobic008G078900 Sobic003G170200--Sobic008G078900 Sobic003G162800 Sobic003G162800 Sobic003G170200--Sobic003G162800 Sobic003G286300 Sobic003G286300 Sobic003G170200--Sobic003G286300 Sobic001G514100 Sobic001G514100 Sobic003G170200--Sobic001G514100 Sobic001G375000 Sobic001G375000 Sobic003G170200--Sobic001G375000 Sobic001G450600 Sobic001G450600 Sobic003G170200--Sobic001G450600 Sobic003G128400 Sobic003G128400 Sobic003G170200--Sobic003G128400 Sobic010G189200--Sobic001G450600 Sobic008G063200 Sobic008G063200 Sobic010G189200--Sobic008G063200 Sobic004G298900 Sobic004G298900 Sobic010G189200--Sobic004G298900 Sobic006G258700 Sobic006G258700 Sobic010G189200--Sobic006G258700 Sobic006G214700 Sobic006G214700 Sobic010G189200--Sobic006G214700 Sobic004G183800 Sobic004G183800 Sobic010G189200--Sobic004G183800 Sobic003G014300 Sobic003G014300 Sobic010G189200--Sobic003G014300 Sobic004G333400 Sobic004G333400 Sobic010G189200--Sobic004G333400 Sobic002G102200 Sobic002G102200 Sobic010G189200--Sobic002G102200 Sobic001G391900 Sobic001G391900 Sobic004G152100--Sobic001G391900 Sobic001G447700 Sobic001G447700 Sobic004G152100--Sobic001G447700 Sobic010G218600 Sobic010G218600 Sobic004G152100--Sobic010G218600 Sobic003G085000 Sobic003G085000 Sobic004G152100--Sobic003G085000 Sobic006G256600 Sobic006G256600 Sobic004G152100--Sobic006G256600 Sobic004G152100--Sobic003G170200 Sobic005G127000 Sobic005G127000 Sobic004G152100--Sobic005G127000 Sobic004G152100--Sobic002G281800 Sobic004G152100--Sobic002G102200 Sobic009G190800 Sobic009G190800 Sobic001G341800--Sobic009G190800 Sobic002G404200 Sobic002G404200 Sobic001G341800--Sobic002G404200 Sobic007G029100 Sobic007G029100 Sobic001G341800--Sobic007G029100 Sobic001G202500 Sobic001G202500 Sobic001G341800--Sobic001G202500 Sobic009G036300 Sobic009G036300 Sobic001G341800--Sobic009G036300 Sobic001G341800--Sobic001G324400 Sobic001G341800--Sobic002G281800 Sobic007G168200 Sobic007G168200 Sobic001G341800--Sobic007G168200 Sobic001G367500 Sobic001G367500 Sobic001G341800--Sobic001G367500 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic006G237100 Sobic006G237100 Sobic001G437200--Sobic006G237100 Sobic003G310100 Sobic003G310100 Sobic001G437200--Sobic003G310100 Sobic002G404900 Sobic002G404900 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G424300 Sobic001G424300 Sobic001G437200--Sobic001G424300 Sobic001G445200 Sobic001G445200 Sobic001G437200--Sobic001G445200 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400 Sobic010G080300 Sobic010G080300 Sobic002G281800--Sobic010G080300 Sobic003G291400 Sobic003G291400 Sobic002G281800--Sobic003G291400 Sobic008G072700 Sobic008G072700 Sobic002G281800--Sobic008G072700 Sobic007G046500 Sobic007G046500 Sobic002G281800--Sobic007G046500 Sobic002G281800--Sobic007G029100 Sobic002G281800--Sobic009G190800 Sobic002G281800--Sobic003G310100 Sobic002G281800--Sobic004G152100 Sobic009G029700 Sobic009G029700 Sobic002G281800--Sobic009G029700 Sobic005G009300 Sobic005G009300 Sobic004G287300--Sobic005G009300 Sobic004G287300--Sobic003G310100 Sobic002G246500 Sobic002G246500 Sobic004G287300--Sobic002G246500 Sobic004G287300--Sobic001G324400 Sobic004G287300--Sobic009G094800 Sobic004G287300--Sobic001G202500 Sobic004G287300--Sobic001G437200 Sobic004G268100 Sobic004G268100 Sobic004G287300--Sobic004G268100 Sobic004G287300--Sobic002G404900 Sobic002G040800 Sobic002G040800 Sobic009G094800--Sobic002G040800 Sobic002G174900 Sobic002G174900 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic008G081150 Sobic008G081150 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic010G113000 Sobic010G113000 Sobic009G148900--Sobic010G113000 Sobic003G222300 Sobic003G222300 Sobic009G148900--Sobic003G222300 Sobic009G148900--Sobic001G427500 Sobic009G017400 Sobic009G017400 Sobic009G148900--Sobic009G017400 Sobic004G147200 Sobic004G147200 Sobic009G148900--Sobic004G147200 Sobic010G265800 Sobic010G265800 Sobic009G148900--Sobic010G265800 Sobic009G148900--Sobic001G324400 Sobic009G148900--Sobic003G170200 Sobic007G110200 Sobic007G110200 Sobic009G148900--Sobic007G110200
Octagon: transcription factors


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