Gene annotation
Transcriptome id Sobic.004G287300.1
Synonym GGR
Functional annotation polyprenyl synthetase, putative, expressed
UniProt A0A194YT87
Pfam PF00348
Panther DB PTHR12001 PTHR12001:SF41
NCBI CDD KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
KEGG Orthology K13789; geranylgeranyl diphosphate synthase, type II
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G38460 : geranylgeranyl reductase
RAP-DB (Rice) LOC_Os02g44780.3 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a032263 , Zm00025a021458
Brachypodium KQK00699
Barley HORVU6Hr1G064460.1 , HORVU6Hr1G064460.3 , HORVU6Hr1G064460.2
Wheat -
Populus -


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cDNA sequences
Sobic.004G287300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G009300 expressed protein -
2 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.002G246500 OTU-like cysteine protease family protein, putative, expressed -
4 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase
5 Sobic.009G094800 sugar porter, putative, expressed -
6 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
7 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
8 Sobic.004G268100 ornithine carbamoyltransferase, putative, expressed K00611: OTC, argF, ornithine carbamoyltransferase
9 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
10 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
11 Sobic.003G283800 transmembrane protein, putative, expressed -
12 Sobic.006G170200 amino acid kinase, putative, expressed K00930: acetylglutamate kinase
13 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
15 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
16 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
17 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
18 Sobic.002G281800 expressed protein -
19 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
20 Sobic.009G057700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3


Gene co-expression network
sample Sobic004G287300 Sobic004G287300 Sobic005G009300 Sobic005G009300 Sobic004G287300--Sobic005G009300 Sobic003G310100 Sobic003G310100 Sobic004G287300--Sobic003G310100 Sobic002G246500 Sobic002G246500 Sobic004G287300--Sobic002G246500 Sobic001G324400 Sobic001G324400 Sobic004G287300--Sobic001G324400 Sobic009G094800 Sobic009G094800 Sobic004G287300--Sobic009G094800 Sobic001G202500 Sobic001G202500 Sobic004G287300--Sobic001G202500 Sobic001G437200 Sobic001G437200 Sobic004G287300--Sobic001G437200 Sobic004G268100 Sobic004G268100 Sobic004G287300--Sobic004G268100 Sobic002G404900 Sobic002G404900 Sobic004G287300--Sobic002G404900 Sobic001G445200 Sobic001G445200 Sobic005G009300--Sobic001G445200 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic006G237100 Sobic006G237100 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic009G137000 Sobic009G137000 Sobic005G009300--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800 Sobic001G424300 Sobic001G424300 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic003G310100--Sobic001G281500 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic003G343400 Sobic003G343400 Sobic002G246500--Sobic003G343400 Sobic003G125400 Sobic003G125400 Sobic002G246500--Sobic003G125400 Sobic009G068300 Sobic009G068300 Sobic002G246500--Sobic009G068300 Sobic010G189200 Sobic010G189200 Sobic002G246500--Sobic010G189200 Sobic010G255100 Sobic010G255100 Sobic002G246500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic002G246500--Sobic006G186600 Sobic006G256600 Sobic006G256600 Sobic002G246500--Sobic006G256600 Sobic002G102200 Sobic002G102200 Sobic002G246500--Sobic002G102200 Sobic006G210400 Sobic006G210400 Sobic002G246500--Sobic006G210400 Sobic001G324400--Sobic003G170200 Sobic001G324400--Sobic010G189200 Sobic004G152100 Sobic004G152100 Sobic001G324400--Sobic004G152100 Sobic001G341800 Sobic001G341800 Sobic001G324400--Sobic001G341800 Sobic001G324400--Sobic001G437200 Sobic002G281800 Sobic002G281800 Sobic001G324400--Sobic002G281800 Sobic001G324400--Sobic004G287300 Sobic001G324400--Sobic009G094800 Sobic009G148900 Sobic009G148900 Sobic001G324400--Sobic009G148900 Sobic002G040800 Sobic002G040800 Sobic009G094800--Sobic002G040800 Sobic002G174900 Sobic002G174900 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic008G081150 Sobic008G081150 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic004G297500 Sobic004G297500 Sobic001G202500--Sobic004G297500 Sobic001G161400 Sobic001G161400 Sobic001G202500--Sobic001G161400 Sobic009G029700 Sobic009G029700 Sobic001G202500--Sobic009G029700 Sobic001G202500--Sobic001G341800 Sobic001G202500--Sobic003G283800 Sobic001G202500--Sobic003G310100 Sobic001G202500--Sobic001G437200 Sobic002G404200 Sobic002G404200 Sobic001G202500--Sobic002G404200 Sobic001G202500--Sobic004G268100 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic001G437200--Sobic003G310100 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G437200--Sobic001G424300 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G437200--Sobic001G161400 Sobic004G268100--Sobic009G029700 Sobic002G332400 Sobic002G332400 Sobic004G268100--Sobic002G332400 Sobic009G124000 Sobic009G124000 Sobic004G268100--Sobic009G124000 Sobic002G238000 Sobic002G238000 Sobic004G268100--Sobic002G238000 Sobic004G268100--Sobic001G437200 Sobic004G268100--Sobic003G310100 Sobic006G170200 Sobic006G170200 Sobic004G268100--Sobic006G170200 Sobic004G214400 Sobic004G214400 Sobic004G268100--Sobic004G214400 Sobic001G375000 Sobic001G375000 Sobic004G268100--Sobic001G375000 Sobic002G404900--Sobic006G237100 Sobic002G404900--Sobic009G137000 Sobic002G404900--Sobic001G395300 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic002G404900--Sobic005G009300 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100
Octagon: transcription factors


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