Gene annotation
Transcriptome id Sobic.003G283800.1
Synonym Sb03g033510
Functional annotation transmembrane protein, putative, expressed
UniProt A0A1B6Q5V5
Pfam PF01940
Panther DB PTHR13353 PTHR13353:SF7
NCBI CDD KOG4491; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G78620 : Protein of unknown function DUF92, transmembrane
RAP-DB (Rice) LOC_Os01g52864.2 : transmembrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a039010
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G283800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
2 Sobic.009G046800 TOC159, putative, expressed -
3 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
4 Sobic.010G086900 OsFBX187 - F-box domain containing protein, expressed -
5 Sobic.005G009300 expressed protein -
6 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
7 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
8 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
9 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.001G537001 - -
11 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
12 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
13 Sobic.002G181132 - -
14 Sobic.006G166500 expressed protein -
15 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
16 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
17 Sobic.004G214400 tic20, putative, expressed -
18 Sobic.003G162800 expressed protein -
19 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
20 Sobic.004G070800 tic21, putative, expressed -


Gene co-expression network
sample Sobic003G283800 Sobic003G283800 Sobic006G237100 Sobic006G237100 Sobic003G283800--Sobic006G237100 Sobic009G046800 Sobic009G046800 Sobic003G283800--Sobic009G046800 Sobic001G161400 Sobic001G161400 Sobic003G283800--Sobic001G161400 Sobic010G086900 Sobic010G086900 Sobic003G283800--Sobic010G086900 Sobic005G009300 Sobic005G009300 Sobic003G283800--Sobic005G009300 Sobic004G297500 Sobic004G297500 Sobic003G283800--Sobic004G297500 Sobic004G003900 Sobic004G003900 Sobic003G283800--Sobic004G003900 Sobic002G140000 Sobic002G140000 Sobic003G283800--Sobic002G140000 Sobic001G395300 Sobic001G395300 Sobic003G283800--Sobic001G395300 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic010G027200 Sobic010G027200 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic009G046800--Sobic010G086900 Sobic009G004800 Sobic009G004800 Sobic009G046800--Sobic009G004800 Sobic009G046800--Sobic001G161400 Sobic003G039300 Sobic003G039300 Sobic009G046800--Sobic003G039300 Sobic009G046800--Sobic004G003900 Sobic004G263200 Sobic004G263200 Sobic009G046800--Sobic004G263200 Sobic009G046800--Sobic006G237100 Sobic009G046800--Sobic003G283800 Sobic009G046800--Sobic002G140000 Sobic001G161400--Sobic006G237100 Sobic001G161400--Sobic003G039300 Sobic006G204100 Sobic006G204100 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic009G234200 Sobic009G234200 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic001G249400 Sobic001G249400 Sobic010G086900--Sobic001G249400 Sobic010G086900--Sobic009G046800 Sobic010G100800 Sobic010G100800 Sobic010G086900--Sobic010G100800 Sobic002G378000 Sobic002G378000 Sobic010G086900--Sobic002G378000 Sobic001G300100 Sobic001G300100 Sobic010G086900--Sobic001G300100 Sobic010G086900--Sobic004G003900 Sobic002G404200 Sobic002G404200 Sobic010G086900--Sobic002G404200 Sobic008G067100 Sobic008G067100 Sobic010G086900--Sobic008G067100 Sobic004G019500 Sobic004G019500 Sobic010G086900--Sobic004G019500 Sobic001G445200 Sobic001G445200 Sobic005G009300--Sobic001G445200 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic009G137000 Sobic009G137000 Sobic005G009300--Sobic009G137000 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic005G009300--Sobic003G283800 Sobic001G202500 Sobic001G202500 Sobic004G297500--Sobic001G202500 Sobic004G297500--Sobic003G283800 Sobic002G181132 Sobic002G181132 Sobic004G297500--Sobic002G181132 Sobic001G448600 Sobic001G448600 Sobic004G297500--Sobic001G448600 Sobic006G166500 Sobic006G166500 Sobic004G297500--Sobic006G166500 Sobic004G297500--Sobic009G046800 Sobic002G191100 Sobic002G191100 Sobic004G297500--Sobic002G191100 Sobic004G297500--Sobic005G009300 Sobic009G105200 Sobic009G105200 Sobic004G297500--Sobic009G105200 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic003G128400 Sobic003G128400 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic007G015300 Sobic007G015300 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200
Octagon: transcription factors


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