Gene annotation
Transcriptome id Sobic.010G086900.1
Synonym Sb10g007530
Functional annotation OsFBX187 - F-box domain containing protein, expressed
UniProt C5Z6W3
Pfam PF08387 PF00646
Panther DB PTHR31639 PTHR31639:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G03100 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os06g06600.1 : OsFBX187 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G249400 tetrapyrrole methylase family protein, putative, expressed K07056: 16S rRNA (cytidine1402-2'-O)-methyltransferase
2 Sobic.009G046800 TOC159, putative, expressed -
3 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
4 Sobic.002G378000 amidase family protein, putative, expressed -
5 Sobic.001G300100 - -
6 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
7 Sobic.002G404200 F-box domain containing protein, expressed -
8 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
9 Sobic.004G019500 pentatricopeptide, putative, expressed -
10 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
11 Sobic.001G120500 toc64, putative, expressed -
12 Sobic.003G162800 expressed protein -
13 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
14 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
15 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
16 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
17 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
18 Sobic.003G345900 histone deacetylase, putative, expressed -
19 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
20 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -


Gene co-expression network
sample Sobic010G086900 Sobic010G086900 Sobic001G249400 Sobic001G249400 Sobic010G086900--Sobic001G249400 Sobic009G046800 Sobic009G046800 Sobic010G086900--Sobic009G046800 Sobic010G100800 Sobic010G100800 Sobic010G086900--Sobic010G100800 Sobic002G378000 Sobic002G378000 Sobic010G086900--Sobic002G378000 Sobic001G300100 Sobic001G300100 Sobic010G086900--Sobic001G300100 Sobic004G003900 Sobic004G003900 Sobic010G086900--Sobic004G003900 Sobic002G404200 Sobic002G404200 Sobic010G086900--Sobic002G404200 Sobic008G067100 Sobic008G067100 Sobic010G086900--Sobic008G067100 Sobic004G019500 Sobic004G019500 Sobic010G086900--Sobic004G019500 Sobic006G088000 Sobic006G088000 Sobic001G249400--Sobic006G088000 Sobic001G375000 Sobic001G375000 Sobic001G249400--Sobic001G375000 Sobic003G162800 Sobic003G162800 Sobic001G249400--Sobic003G162800 Sobic002G156100 Sobic002G156100 Sobic001G249400--Sobic002G156100 Sobic001G249400--Sobic010G086900 Sobic003G128400 Sobic003G128400 Sobic001G249400--Sobic003G128400 Sobic010G255100 Sobic010G255100 Sobic001G249400--Sobic010G255100 Sobic001G102500 Sobic001G102500 Sobic001G249400--Sobic001G102500 Sobic001G382800 Sobic001G382800 Sobic001G249400--Sobic001G382800 Sobic009G046800--Sobic010G086900 Sobic009G004800 Sobic009G004800 Sobic009G046800--Sobic009G004800 Sobic001G161400 Sobic001G161400 Sobic009G046800--Sobic001G161400 Sobic003G039300 Sobic003G039300 Sobic009G046800--Sobic003G039300 Sobic009G046800--Sobic004G003900 Sobic004G263200 Sobic004G263200 Sobic009G046800--Sobic004G263200 Sobic006G237100 Sobic006G237100 Sobic009G046800--Sobic006G237100 Sobic003G283800 Sobic003G283800 Sobic009G046800--Sobic003G283800 Sobic002G140000 Sobic002G140000 Sobic009G046800--Sobic002G140000 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic010G100800--Sobic001G300100 Sobic010G100800--Sobic002G404200 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic002G378000--Sobic008G067100 Sobic002G378000--Sobic010G086900 Sobic001G281500 Sobic001G281500 Sobic002G378000--Sobic001G281500 Sobic003G310100 Sobic003G310100 Sobic002G378000--Sobic003G310100 Sobic009G104700 Sobic009G104700 Sobic002G378000--Sobic009G104700 Sobic002G378000--Sobic003G128400 Sobic007G101300 Sobic007G101300 Sobic002G378000--Sobic007G101300 Sobic005G184300 Sobic005G184300 Sobic002G378000--Sobic005G184300 Sobic001G424300 Sobic001G424300 Sobic002G378000--Sobic001G424300 Sobic008G172300 Sobic008G172300 Sobic001G300100--Sobic008G172300 Sobic007G110700 Sobic007G110700 Sobic001G300100--Sobic007G110700 Sobic001G300100--Sobic010G100800 Sobic002G339300 Sobic002G339300 Sobic001G300100--Sobic002G339300 Sobic001G300100--Sobic002G404200 Sobic009G193500 Sobic009G193500 Sobic001G300100--Sobic009G193500 Sobic001G300100--Sobic010G086900 Sobic001G300100--Sobic001G261900 Sobic004G262700 Sobic004G262700 Sobic001G300100--Sobic004G262700 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic002G404200--Sobic001G300100 Sobic002G142066 Sobic002G142066 Sobic002G404200--Sobic002G142066 Sobic002G404200--Sobic010G100800 Sobic007G029100 Sobic007G029100 Sobic002G404200--Sobic007G029100 Sobic008G193300 Sobic008G193300 Sobic002G404200--Sobic008G193300 Sobic002G404200--Sobic010G086900 Sobic001G341800 Sobic001G341800 Sobic002G404200--Sobic001G341800 Sobic001G279900 Sobic001G279900 Sobic002G404200--Sobic001G279900 Sobic002G404200--Sobic009G004800 Sobic008G067100--Sobic008G090900 Sobic007G095500 Sobic007G095500 Sobic008G067100--Sobic007G095500 Sobic004G144400 Sobic004G144400 Sobic008G067100--Sobic004G144400 Sobic008G067100--Sobic002G156100 Sobic008G067100--Sobic001G382800 Sobic008G067100--Sobic004G003900 Sobic008G067100--Sobic003G128400 Sobic004G208600 Sobic004G208600 Sobic008G067100--Sobic004G208600 Sobic008G067100--Sobic002G378000 Sobic004G019500--Sobic004G144400 Sobic001G540800 Sobic001G540800 Sobic004G019500--Sobic001G540800 Sobic009G214200 Sobic009G214200 Sobic004G019500--Sobic009G214200 Sobic001G326300 Sobic001G326300 Sobic004G019500--Sobic001G326300 Sobic007G210000 Sobic007G210000 Sobic004G019500--Sobic007G210000 Sobic001G022500 Sobic001G022500 Sobic004G019500--Sobic001G022500 Sobic004G225600 Sobic004G225600 Sobic004G019500--Sobic004G225600 Sobic003G434700 Sobic003G434700 Sobic004G019500--Sobic003G434700 Sobic004G019500--Sobic004G003900
Octagon: transcription factors


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