Gene annotation
Transcriptome id Sobic.004G070800.1
Synonym TIC21, CIA5, Sb04g005930, ATTIC21, PIC1
Functional annotation tic21, putative, expressed
UniProt C5XX06
Pfam PF12263
Panther DB PTHR34548 PTHR34548:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15290 : translocon at inner membrane of chloroplasts 21
RAP-DB (Rice) LOC_Os02g09470.1 : tic21, putative, expressed
MaizeGDB (Corn) Zm00025a019351 , Zm00025a034709
Brachypodium KQJ93747
Barley HORVU6Hr1G035520.4 , HORVU7Hr1G116680.3 , HORVU6Hr1G035520.3 , HORVU6Hr1G035520.2 , HORVU6Hr1G035520.1 , HORVU7Hr1G116680.4 , HORVU7Hr1G116680.2 , HORVU7Hr1G116680.1
Wheat TraesCS6D02G163000 , TraesCS7D02G514600 , TraesCS7A02G525800
Populus -


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cDNA sequences
Sobic.004G070800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G383500 rhodanese-like, putative, expressed -
2 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
3 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
4 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
5 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
6 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
7 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
8 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
9 Sobic.006G114300 pentatricopeptide, putative, expressed -
10 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
11 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
12 Sobic.001G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed -
13 Sobic.004G214400 tic20, putative, expressed -
14 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
15 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
16 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
17 Sobic.005G110481 - -
18 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
19 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.001G011300 expressed protein -


Gene co-expression network
sample Sobic004G070800 Sobic004G070800 Sobic003G383500 Sobic003G383500 Sobic004G070800--Sobic003G383500 Sobic007G013400 Sobic007G013400 Sobic004G070800--Sobic007G013400 Sobic004G109000 Sobic004G109000 Sobic004G070800--Sobic004G109000 Sobic004G015700 Sobic004G015700 Sobic004G070800--Sobic004G015700 Sobic001G357200 Sobic001G357200 Sobic004G070800--Sobic001G357200 Sobic003G261200 Sobic003G261200 Sobic004G070800--Sobic003G261200 Sobic001G104300 Sobic001G104300 Sobic004G070800--Sobic001G104300 Sobic007G211100 Sobic007G211100 Sobic004G070800--Sobic007G211100 Sobic006G114300 Sobic006G114300 Sobic004G070800--Sobic006G114300 Sobic003G383500--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G383500--Sobic009G001500 Sobic003G295800 Sobic003G295800 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic004G044000 Sobic004G044000 Sobic003G383500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic003G383500--Sobic004G109000 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic001G188600 Sobic001G188600 Sobic004G109000--Sobic001G188600 Sobic004G109000--Sobic007G211100 Sobic004G109000--Sobic006G114300 Sobic004G109000--Sobic003G383500 Sobic009G059100 Sobic009G059100 Sobic004G109000--Sobic009G059100 Sobic001G069500 Sobic001G069500 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300 Sobic006G263800 Sobic006G263800 Sobic004G015700--Sobic006G263800 Sobic004G015700--Sobic003G383500 Sobic009G083300 Sobic009G083300 Sobic004G015700--Sobic009G083300 Sobic004G015700--Sobic007G013400 Sobic001G099000 Sobic001G099000 Sobic004G015700--Sobic001G099000 Sobic001G236800 Sobic001G236800 Sobic004G015700--Sobic001G236800 Sobic002G190100 Sobic002G190100 Sobic004G015700--Sobic002G190100 Sobic009G212000 Sobic009G212000 Sobic004G015700--Sobic009G212000 Sobic004G015700--Sobic003G261200 Sobic001G357200--Sobic001G188600 Sobic001G357200--Sobic006G114300 Sobic010G012900 Sobic010G012900 Sobic001G357200--Sobic010G012900 Sobic001G357200--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G357200--Sobic008G030000 Sobic007G034500 Sobic007G034500 Sobic001G357200--Sobic007G034500 Sobic008G123600 Sobic008G123600 Sobic001G357200--Sobic008G123600 Sobic001G357200--Sobic001G069500 Sobic001G357200--Sobic003G383500 Sobic003G261200--Sobic007G013400 Sobic009G130800 Sobic009G130800 Sobic003G261200--Sobic009G130800 Sobic003G261200--Sobic003G383500 Sobic003G261200--Sobic003G295800 Sobic010G095200 Sobic010G095200 Sobic003G261200--Sobic010G095200 Sobic003G261200--Sobic009G001500 Sobic007G090537 Sobic007G090537 Sobic003G261200--Sobic007G090537 Sobic003G261200--Sobic007G211100 Sobic003G261200--Sobic001G069500 Sobic002G078000 Sobic002G078000 Sobic001G104300--Sobic002G078000 Sobic006G281066 Sobic006G281066 Sobic001G104300--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic001G104300--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic001G104300--Sobic003G165800 Sobic001G104300--Sobic004G070800 Sobic001G013900 Sobic001G013900 Sobic001G104300--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic001G104300--Sobic004G109000 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic007G211100--Sobic008G123600 Sobic009G098100 Sobic009G098100 Sobic007G211100--Sobic009G098100 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic006G114300--Sobic004G109000 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic006G114300--Sobic003G383500 Sobic004G253800 Sobic004G253800 Sobic006G114300--Sobic004G253800 Sobic006G114300--Sobic007G211100 Sobic006G114300--Sobic007G013400
Octagon: transcription factors


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