Gene annotation
Transcriptome id Sobic.005G009300.1
Synonym Sb05g000870, PTAC6
Functional annotation expressed protein
UniProt C5Y337
Pfam -
Panther DB PTHR35994
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21600 : plastid transcriptionally active 6
RAP-DB (Rice) LOC_Os11g01890.1 : expressed protein
MaizeGDB (Corn) Zm00025a033289
Brachypodium KQJ92592
Barley HORVU5Hr1G047060.1 , HORVU5Hr1G047060.2 , HORVU5Hr1G047060.3 , HORVU5Hr1G047060.4 , HORVU5Hr1G047060.5 , HORVU5Hr1G047060.6 , HORVU5Hr1G047060.7 , HORVU5Hr1G047060.8 , HORVU5Hr1G047060.9 , HORVU5Hr1G047060.23 , HORVU5Hr1G047060.22 , HORVU5Hr1G047060.21 , HORVU5Hr1G047060.20 , HORVU5Hr1G047060.27 , HORVU5Hr1G047060.26 , HORVU5Hr1G047060.25 , HORVU5Hr1G047060.24 , HORVU5Hr1G047060.18 , HORVU5Hr1G047060.19 , HORVU5Hr1G047060.12 , HORVU5Hr1G047060.13 , HORVU5Hr1G047060.10 , HORVU5Hr1G047060.11 , HORVU5Hr1G047060.16 , HORVU5Hr1G047060.17 , HORVU5Hr1G047060.14 , HORVU5Hr1G047060.15
Wheat TraesCS5B02G147600 , TraesCS5D02G143800 , TraesCS5A02G149000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G445200 expressed protein -
2 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
3 Sobic.003G162800 expressed protein -
4 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
5 Sobic.002G409900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spo0B-associated GTP-binding protein, putative, expressed -
6 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
7 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.003G283800 transmembrane protein, putative, expressed -
10 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
11 Sobic.006G166500 expressed protein -
12 Sobic.002G181132 - -
13 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
14 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
15 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
16 Sobic.003G345900 histone deacetylase, putative, expressed -
17 Sobic.004G287300 polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
18 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
20 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic005G009300 Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic005G009300--Sobic001G445200 Sobic002G404900 Sobic002G404900 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic006G237100 Sobic006G237100 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic009G137000 Sobic009G137000 Sobic005G009300--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800 Sobic001G445200--Sobic006G237100 Sobic001G445200--Sobic005G009300 Sobic001G437200 Sobic001G437200 Sobic001G445200--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic001G445200--Sobic001G281500 Sobic001G445200--Sobic002G404900 Sobic003G310100 Sobic003G310100 Sobic001G445200--Sobic003G310100 Sobic002G156100 Sobic002G156100 Sobic001G445200--Sobic002G156100 Sobic001G445200--Sobic002G409900 Sobic001G445200--Sobic003G162800 Sobic002G404900--Sobic006G237100 Sobic002G404900--Sobic009G137000 Sobic002G404900--Sobic001G395300 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic001G161400 Sobic001G161400 Sobic002G404900--Sobic001G161400 Sobic002G404900--Sobic005G009300 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100 Sobic001G375000 Sobic001G375000 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic004G003900 Sobic004G003900 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic010G027200 Sobic010G027200 Sobic003G162800--Sobic010G027200 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic006G237100--Sobic003G310100 Sobic002G409900--Sobic001G445200 Sobic002G409900--Sobic005G009300 Sobic007G027000 Sobic007G027000 Sobic002G409900--Sobic007G027000 Sobic002G409900--Sobic002G156100 Sobic002G409900--Sobic003G345900 Sobic001G293300 Sobic001G293300 Sobic002G409900--Sobic001G293300 Sobic002G409900--Sobic003G162800 Sobic003G158300 Sobic003G158300 Sobic002G409900--Sobic003G158300 Sobic002G409900--Sobic002G404900 Sobic009G137000--Sobic001G395300 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G233800 Sobic009G233800 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic006G110200 Sobic006G110200 Sobic009G137000--Sobic006G110200 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200 Sobic001G102500 Sobic001G102500 Sobic003G170200--Sobic001G102500 Sobic007G205600 Sobic007G205600 Sobic003G170200--Sobic007G205600 Sobic008G078900 Sobic008G078900 Sobic003G170200--Sobic008G078900 Sobic003G170200--Sobic003G162800 Sobic003G286300 Sobic003G286300 Sobic003G170200--Sobic003G286300 Sobic003G170200--Sobic001G514100 Sobic003G170200--Sobic001G375000 Sobic001G450600 Sobic001G450600 Sobic003G170200--Sobic001G450600 Sobic003G128400 Sobic003G128400 Sobic003G170200--Sobic003G128400 Sobic003G283800--Sobic006G237100 Sobic009G046800 Sobic009G046800 Sobic003G283800--Sobic009G046800 Sobic003G283800--Sobic001G161400 Sobic010G086900 Sobic010G086900 Sobic003G283800--Sobic010G086900 Sobic003G283800--Sobic005G009300 Sobic004G297500 Sobic004G297500 Sobic003G283800--Sobic004G297500 Sobic003G283800--Sobic004G003900 Sobic003G283800--Sobic002G140000 Sobic003G283800--Sobic001G395300
Octagon: transcription factors


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