Gene annotation
Transcriptome id Sobic.004G249500.1
Synonym SbBBX8, SbBBX8;B-box (BBX) protein, B-box (BBX) protein, Sb04g028920
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5XZC4
Pfam PF00643 PF06203
Panther DB PTHR31874 PTHR31874:SF4
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G68520 : B-box type zinc finger protein with CCT domain
RAP-DB (Rice) LOC_Os02g49880.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a021921
Brachypodium -
Barley HORVU6Hr1G073170.6 , HORVU6Hr1G073170.4 , HORVU6Hr1G073170.5 , HORVU6Hr1G073170.2 , HORVU6Hr1G073170.1 , HORVU6Hr1G073170.7 , HORVU6Hr1G073170.3
Wheat TraesCS6B02G323400 , TraesCS6A02G293200 , TraesCS6A02G293200 , TraesCS6D02G274100 , TraesCS6D02G274100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
2 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
3 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
4 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
5 Sobic.001G426400 expressed protein -
6 Sobic.008G177850 - -
7 Sobic.004G246800 pentatricopeptide, putative, expressed -
8 Sobic.003G114100 expressed protein -
9 Sobic.005G009300 expressed protein -
10 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
11 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -
13 Sobic.005G022800 GTP binding protein, putative, expressed -
14 Sobic.005G225300 - -
15 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
17 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
18 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
19 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
20 Sobic.004G055600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G249500 Sobic004G249500 Sobic001G076200 Sobic001G076200 Sobic004G249500--Sobic001G076200 Sobic003G030400 Sobic003G030400 Sobic004G249500--Sobic003G030400 Sobic008G101500 Sobic008G101500 Sobic004G249500--Sobic008G101500 Sobic009G238100 Sobic009G238100 Sobic004G249500--Sobic009G238100 Sobic001G426400 Sobic001G426400 Sobic004G249500--Sobic001G426400 Sobic008G177850 Sobic008G177850 Sobic004G249500--Sobic008G177850 Sobic004G246800 Sobic004G246800 Sobic004G249500--Sobic004G246800 Sobic003G114100 Sobic003G114100 Sobic004G249500--Sobic003G114100 Sobic005G009300 Sobic005G009300 Sobic004G249500--Sobic005G009300 Sobic001G076200--Sobic004G246800 Sobic001G076200--Sobic003G030400 Sobic001G537700 Sobic001G537700 Sobic001G076200--Sobic001G537700 Sobic001G076200--Sobic003G114100 Sobic009G233800 Sobic009G233800 Sobic001G076200--Sobic009G233800 Sobic001G076200--Sobic004G249500 Sobic008G021700 Sobic008G021700 Sobic001G076200--Sobic008G021700 Sobic002G114700 Sobic002G114700 Sobic001G076200--Sobic002G114700 Sobic004G055600 Sobic004G055600 Sobic001G076200--Sobic004G055600 Sobic003G222600 Sobic003G222600 Sobic003G030400--Sobic003G222600 Sobic008G148400 Sobic008G148400 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic003G030400--Sobic001G076200 Sobic003G030400--Sobic009G238100 Sobic009G137000 Sobic009G137000 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic003G030400--Sobic004G249500 Sobic008G101500--Sobic001G076200 Sobic008G101500--Sobic004G249500 Sobic005G127000 Sobic005G127000 Sobic008G101500--Sobic005G127000 Sobic008G101500--Sobic003G114100 Sobic007G179750 Sobic007G179750 Sobic008G101500--Sobic007G179750 Sobic003G178700 Sobic003G178700 Sobic008G101500--Sobic003G178700 Sobic001G093600 Sobic001G093600 Sobic008G101500--Sobic001G093600 Sobic001G217700 Sobic001G217700 Sobic008G101500--Sobic001G217700 Sobic008G118000 Sobic008G118000 Sobic008G101500--Sobic008G118000 Sobic009G238100--Sobic008G148400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic006G265400 Sobic006G265400 Sobic001G426400--Sobic006G265400 Sobic001G426400--Sobic008G148400 Sobic001G426400--Sobic009G238100 Sobic009G032100 Sobic009G032100 Sobic001G426400--Sobic009G032100 Sobic001G426400--Sobic004G249500 Sobic003G255100 Sobic003G255100 Sobic001G426400--Sobic003G255100 Sobic001G426400--Sobic003G030400 Sobic007G060900 Sobic007G060900 Sobic001G426400--Sobic007G060900 Sobic007G131200 Sobic007G131200 Sobic001G426400--Sobic007G131200 Sobic003G222300 Sobic003G222300 Sobic008G177850--Sobic003G222300 Sobic008G177850--Sobic001G076200 Sobic008G177850--Sobic004G055600 Sobic008G177850--Sobic008G101500 Sobic008G177850--Sobic004G249500 Sobic003G026700 Sobic003G026700 Sobic008G177850--Sobic003G026700 Sobic010G258300 Sobic010G258300 Sobic008G177850--Sobic010G258300 Sobic008G177850--Sobic001G093600 Sobic009G136900 Sobic009G136900 Sobic008G177850--Sobic009G136900 Sobic004G246800--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic004G246800--Sobic002G209600 Sobic008G131700 Sobic008G131700 Sobic004G246800--Sobic008G131700 Sobic004G246800--Sobic008G021700 Sobic005G022800 Sobic005G022800 Sobic004G246800--Sobic005G022800 Sobic004G151900 Sobic004G151900 Sobic004G246800--Sobic004G151900 Sobic001G514100 Sobic001G514100 Sobic004G246800--Sobic001G514100 Sobic005G197300 Sobic005G197300 Sobic004G246800--Sobic005G197300 Sobic004G255500 Sobic004G255500 Sobic004G246800--Sobic004G255500 Sobic003G114100--Sobic002G114700 Sobic003G114100--Sobic001G076200 Sobic008G078900 Sobic008G078900 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic007G201400 Sobic007G201400 Sobic003G114100--Sobic007G201400 Sobic003G114100--Sobic008G131700 Sobic006G273400 Sobic006G273400 Sobic003G114100--Sobic006G273400 Sobic003G114100--Sobic001G514100 Sobic001G445200 Sobic001G445200 Sobic005G009300--Sobic001G445200 Sobic002G404900 Sobic002G404900 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic006G237100 Sobic006G237100 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic005G009300--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800
Octagon: transcription factors


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