Gene annotation
Transcriptome id Sobic.004G055600.1
Synonym Sb04g004710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide containing protein, putative, expressed
UniProt A0A1Z5RL16
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF421
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g07360.1 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a019077
Brachypodium KQJ93537
Barley HORVU6Hr1G032270.14 , HORVU6Hr1G032270.15 , HORVU6Hr1G032270.16 , HORVU6Hr1G032270.17 , HORVU6Hr1G032270.10 , HORVU6Hr1G032270.11 , HORVU6Hr1G032270.12 , HORVU6Hr1G032270.13 , HORVU6Hr1G032270.18 , HORVU6Hr1G032270.19 , HORVU6Hr1G032270.29 , HORVU6Hr1G032270.28 , HORVU6Hr1G032270.21 , HORVU6Hr1G032270.20 , HORVU6Hr1G032270.23 , HORVU6Hr1G032270.22 , HORVU6Hr1G032270.25 , HORVU6Hr1G032270.24 , HORVU6Hr1G032270.27 , HORVU6Hr1G032270.36 , HORVU6Hr1G032270.34 , HORVU6Hr1G032270.32 , HORVU6Hr1G032270.33 , HORVU6Hr1G032270.30 , HORVU6Hr1G032270.31 , HORVU6Hr1G032270.8 , HORVU6Hr1G032270.9 , HORVU6Hr1G032270.6 , HORVU6Hr1G032270.7 , HORVU6Hr1G032270.4 , HORVU6Hr1G032270.5 , HORVU6Hr1G032270.2 , HORVU6Hr1G032270.3 , HORVU6Hr1G032270.1 , HORVU6Hr1G032270.35
Wheat TraesCS6B02G186300 , TraesCS6B02G186300 , TraesCS6A02G163600 , TraesCS6A02G163600 , TraesCS6D02G147800 , TraesCS6D02G147800 , TraesCS6D02G147800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
2 Sobic.002G004000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
3 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
4 Sobic.001G255400 - -
5 Sobic.009G136900 peptide transporter PTR2, putative, expressed -
6 Sobic.001G388400 expressed protein -
7 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
8 Sobic.008G177850 - -
9 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
10 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.003G114100 expressed protein -
12 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
13 Sobic.001G093600 - -
14 Sobic.010G074200 - -
15 Sobic.003G107300 light-induced protein 1-like, putative, expressed -
16 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
17 Sobic.003G026700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
18 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
19 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
20 Sobic.010G270900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic004G055600 Sobic004G055600 Sobic009G233800 Sobic009G233800 Sobic004G055600--Sobic009G233800 Sobic002G004000 Sobic002G004000 Sobic004G055600--Sobic002G004000 Sobic001G076200 Sobic001G076200 Sobic004G055600--Sobic001G076200 Sobic001G255400 Sobic001G255400 Sobic004G055600--Sobic001G255400 Sobic009G136900 Sobic009G136900 Sobic004G055600--Sobic009G136900 Sobic001G388400 Sobic001G388400 Sobic004G055600--Sobic001G388400 Sobic009G253000 Sobic009G253000 Sobic004G055600--Sobic009G253000 Sobic008G177850 Sobic008G177850 Sobic004G055600--Sobic008G177850 Sobic008G101500 Sobic008G101500 Sobic004G055600--Sobic008G101500 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G233800--Sobic006G204100 Sobic009G233800--Sobic001G388400 Sobic009G233800--Sobic004G055600 Sobic003G030400 Sobic003G030400 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G137000 Sobic009G137000 Sobic009G233800--Sobic009G137000 Sobic009G233800--Sobic001G076200 Sobic010G028000 Sobic010G028000 Sobic009G233800--Sobic010G028000 Sobic002G004000--Sobic004G055600 Sobic002G004000--Sobic006G204100 Sobic001G120000 Sobic001G120000 Sobic002G004000--Sobic001G120000 Sobic004G017200 Sobic004G017200 Sobic002G004000--Sobic004G017200 Sobic003G030900 Sobic003G030900 Sobic002G004000--Sobic003G030900 Sobic001G240000 Sobic001G240000 Sobic002G004000--Sobic001G240000 Sobic002G305700 Sobic002G305700 Sobic002G004000--Sobic002G305700 Sobic003G221700 Sobic003G221700 Sobic002G004000--Sobic003G221700 Sobic001G333000 Sobic001G333000 Sobic002G004000--Sobic001G333000 Sobic004G246800 Sobic004G246800 Sobic001G076200--Sobic004G246800 Sobic001G076200--Sobic003G030400 Sobic001G537700 Sobic001G537700 Sobic001G076200--Sobic001G537700 Sobic003G114100 Sobic003G114100 Sobic001G076200--Sobic003G114100 Sobic001G076200--Sobic009G233800 Sobic004G249500 Sobic004G249500 Sobic001G076200--Sobic004G249500 Sobic008G021700 Sobic008G021700 Sobic001G076200--Sobic008G021700 Sobic002G114700 Sobic002G114700 Sobic001G076200--Sobic002G114700 Sobic001G076200--Sobic004G055600 Sobic001G255400--Sobic001G120000 Sobic001G255400--Sobic004G055600 Sobic001G255400--Sobic002G004000 Sobic001G255400--Sobic009G233800 Sobic001G255400--Sobic006G204100 Sobic006G265400 Sobic006G265400 Sobic001G255400--Sobic006G265400 Sobic001G255400--Sobic001G076200 Sobic003G283100 Sobic003G283100 Sobic001G255400--Sobic003G283100 Sobic001G426400 Sobic001G426400 Sobic001G255400--Sobic001G426400 Sobic006G263800 Sobic006G263800 Sobic009G136900--Sobic006G263800 Sobic009G136900--Sobic001G076200 Sobic007G210600 Sobic007G210600 Sobic009G136900--Sobic007G210600 Sobic009G136900--Sobic003G114100 Sobic009G136900--Sobic004G055600 Sobic004G015700 Sobic004G015700 Sobic009G136900--Sobic004G015700 Sobic009G136900--Sobic002G004000 Sobic008G117600 Sobic008G117600 Sobic009G136900--Sobic008G117600 Sobic009G136900--Sobic001G120000 Sobic009G234200 Sobic009G234200 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic009G036300 Sobic009G036300 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic007G227600 Sobic007G227600 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic001G388400--Sobic009G253000 Sobic001G388400--Sobic009G233800 Sobic002G250100 Sobic002G250100 Sobic001G388400--Sobic002G250100 Sobic009G253000--Sobic001G388400 Sobic009G253000--Sobic007G227600 Sobic009G238100 Sobic009G238100 Sobic009G253000--Sobic009G238100 Sobic009G253000--Sobic010G074100 Sobic009G253000--Sobic009G036300 Sobic009G253000--Sobic010G028000 Sobic009G253000--Sobic009G233800 Sobic009G253000--Sobic010G074200 Sobic009G253000--Sobic006G204100 Sobic003G222300 Sobic003G222300 Sobic008G177850--Sobic003G222300 Sobic008G177850--Sobic001G076200 Sobic008G177850--Sobic004G055600 Sobic008G177850--Sobic008G101500 Sobic008G177850--Sobic004G249500 Sobic003G026700 Sobic003G026700 Sobic008G177850--Sobic003G026700 Sobic010G258300 Sobic010G258300 Sobic008G177850--Sobic010G258300 Sobic001G093600 Sobic001G093600 Sobic008G177850--Sobic001G093600 Sobic008G177850--Sobic009G136900 Sobic008G101500--Sobic001G076200 Sobic008G101500--Sobic004G249500 Sobic005G127000 Sobic005G127000 Sobic008G101500--Sobic005G127000 Sobic008G101500--Sobic003G114100 Sobic007G179750 Sobic007G179750 Sobic008G101500--Sobic007G179750 Sobic003G178700 Sobic003G178700 Sobic008G101500--Sobic003G178700 Sobic008G101500--Sobic001G093600 Sobic001G217700 Sobic001G217700 Sobic008G101500--Sobic001G217700 Sobic008G118000 Sobic008G118000 Sobic008G101500--Sobic008G118000
Octagon: transcription factors


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