Gene annotation
Transcriptome id Sobic.003G026700.1
Synonym SbBBX5, B-box (BBX) protein, LZF1, Sb03g002510, STH3, DBB3
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
B-box zinc finger family protein, putative, expressed
UniProt C5XL81
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G78600 : light-regulated zinc finger protein 1
RAP-DB (Rice) LOC_Os01g10580.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022985
Brachypodium KQK07074 , KQK03217
Barley HORVU3Hr1G026500.8 , HORVU3Hr1G026500.9 , HORVU3Hr1G026500.4 , HORVU3Hr1G026500.5 , HORVU3Hr1G026500.6 , HORVU3Hr1G026500.7 , HORVU3Hr1G026500.1 , HORVU3Hr1G026500.2 , HORVU3Hr1G026500.3
Wheat TraesCS3D02G139600 , TraesCS3B02G156900 , TraesCS3A02G139300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G107300 light-induced protein 1-like, putative, expressed -
2 Sobic.001G093600 - -
3 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
4 Sobic.008G177850 - -
5 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
6 Sobic.007G191900 ACT domain containing protein, expressed -
7 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
8 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G406700 expressed protein -
10 Sobic.007G179750 - -
11 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
12 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
13 Sobic.004G055600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -
14 Sobic.001G191200 a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed -
15 Sobic.010G268200 zinc finger, C3HC4 type, domain containing protein, expressed -
16 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
17 Sobic.001G030500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
18 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
19 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
20 Sobic.001G388400 expressed protein -


Gene co-expression network
sample Sobic003G026700 Sobic003G026700 Sobic003G107300 Sobic003G107300 Sobic003G026700--Sobic003G107300 Sobic001G093600 Sobic001G093600 Sobic003G026700--Sobic001G093600 Sobic001G423100 Sobic001G423100 Sobic003G026700--Sobic001G423100 Sobic008G177850 Sobic008G177850 Sobic003G026700--Sobic008G177850 Sobic009G154600 Sobic009G154600 Sobic003G026700--Sobic009G154600 Sobic007G191900 Sobic007G191900 Sobic003G026700--Sobic007G191900 Sobic009G253000 Sobic009G253000 Sobic003G026700--Sobic009G253000 Sobic003G255100 Sobic003G255100 Sobic003G026700--Sobic003G255100 Sobic003G406700 Sobic003G406700 Sobic003G026700--Sobic003G406700 Sobic003G107300--Sobic001G093600 Sobic003G107300--Sobic009G154600 Sobic001G191200 Sobic001G191200 Sobic003G107300--Sobic001G191200 Sobic003G107300--Sobic003G406700 Sobic003G107300--Sobic003G026700 Sobic003G107300--Sobic003G255100 Sobic001G005500 Sobic001G005500 Sobic003G107300--Sobic001G005500 Sobic009G213400 Sobic009G213400 Sobic003G107300--Sobic009G213400 Sobic003G222300 Sobic003G222300 Sobic003G107300--Sobic003G222300 Sobic001G093600--Sobic003G107300 Sobic006G273000 Sobic006G273000 Sobic001G093600--Sobic006G273000 Sobic001G093600--Sobic001G005500 Sobic001G275200 Sobic001G275200 Sobic001G093600--Sobic001G275200 Sobic001G093600--Sobic003G255100 Sobic007G179750 Sobic007G179750 Sobic001G093600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic001G093600--Sobic003G284300 Sobic001G093600--Sobic007G191900 Sobic001G321600 Sobic001G321600 Sobic001G093600--Sobic001G321600 Sobic001G423100--Sobic009G154600 Sobic008G148400 Sobic008G148400 Sobic001G423100--Sobic008G148400 Sobic001G423100--Sobic001G191200 Sobic001G423100--Sobic003G406700 Sobic001G078200 Sobic001G078200 Sobic001G423100--Sobic001G078200 Sobic001G031300 Sobic001G031300 Sobic001G423100--Sobic001G031300 Sobic006G279800 Sobic006G279800 Sobic001G423100--Sobic006G279800 Sobic010G258300 Sobic010G258300 Sobic001G423100--Sobic010G258300 Sobic003G030400 Sobic003G030400 Sobic001G423100--Sobic003G030400 Sobic008G177850--Sobic003G222300 Sobic001G076200 Sobic001G076200 Sobic008G177850--Sobic001G076200 Sobic004G055600 Sobic004G055600 Sobic008G177850--Sobic004G055600 Sobic008G101500 Sobic008G101500 Sobic008G177850--Sobic008G101500 Sobic004G249500 Sobic004G249500 Sobic008G177850--Sobic004G249500 Sobic008G177850--Sobic003G026700 Sobic008G177850--Sobic010G258300 Sobic008G177850--Sobic001G093600 Sobic009G136900 Sobic009G136900 Sobic008G177850--Sobic009G136900 Sobic009G154600--Sobic001G191200 Sobic009G154600--Sobic003G107300 Sobic009G154600--Sobic001G423100 Sobic009G154600--Sobic008G148400 Sobic009G154600--Sobic010G258300 Sobic009G154600--Sobic003G406700 Sobic009G154600--Sobic003G222300 Sobic009G154600--Sobic001G031300 Sobic009G154600--Sobic009G213400 Sobic007G191900--Sobic001G005500 Sobic007G191900--Sobic001G321600 Sobic007G191900--Sobic001G093600 Sobic007G191900--Sobic003G255100 Sobic001G525900 Sobic001G525900 Sobic007G191900--Sobic001G525900 Sobic002G195700 Sobic002G195700 Sobic007G191900--Sobic002G195700 Sobic006G269400 Sobic006G269400 Sobic007G191900--Sobic006G269400 Sobic002G281000 Sobic002G281000 Sobic007G191900--Sobic002G281000 Sobic007G191900--Sobic006G273000 Sobic001G388400 Sobic001G388400 Sobic009G253000--Sobic001G388400 Sobic007G227600 Sobic007G227600 Sobic009G253000--Sobic007G227600 Sobic009G238100 Sobic009G238100 Sobic009G253000--Sobic009G238100 Sobic010G074100 Sobic010G074100 Sobic009G253000--Sobic010G074100 Sobic009G036300 Sobic009G036300 Sobic009G253000--Sobic009G036300 Sobic010G028000 Sobic010G028000 Sobic009G253000--Sobic010G028000 Sobic009G233800 Sobic009G233800 Sobic009G253000--Sobic009G233800 Sobic010G074200 Sobic010G074200 Sobic009G253000--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G253000--Sobic006G204100 Sobic010G079700 Sobic010G079700 Sobic003G255100--Sobic010G079700 Sobic003G255100--Sobic001G093600 Sobic002G155900 Sobic002G155900 Sobic003G255100--Sobic002G155900 Sobic003G255100--Sobic001G005500 Sobic001G179100 Sobic001G179100 Sobic003G255100--Sobic001G179100 Sobic001G030500 Sobic001G030500 Sobic003G255100--Sobic001G030500 Sobic003G255100--Sobic006G269400 Sobic002G287000 Sobic002G287000 Sobic003G255100--Sobic002G287000 Sobic003G255100--Sobic007G191900 Sobic003G406700--Sobic001G191200 Sobic001G377000 Sobic001G377000 Sobic003G406700--Sobic001G377000 Sobic003G406700--Sobic009G154600 Sobic003G406700--Sobic003G107300 Sobic003G406700--Sobic001G423100 Sobic001G225500 Sobic001G225500 Sobic003G406700--Sobic001G225500 Sobic003G406700--Sobic006G279800 Sobic003G406700--Sobic001G031300 Sobic002G331000 Sobic002G331000 Sobic003G406700--Sobic002G331000
Octagon: transcription factors


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