Gene annotation
Transcriptome id Sobic.010G268200.1
Synonym NIP2, Sb10g030310
Functional annotation zinc finger, C3HC4 type, domain containing protein, expressed
UniProt C5Z1X1
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G35840 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g50370.1 : zinc finger, C3HC4 type, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018500
Brachypodium PNT75317 , KQK16719
Barley HORVU7Hr1G117640.4 , HORVU7Hr1G117640.5 , HORVU7Hr1G117640.1 , HORVU7Hr1G117640.2 , HORVU7Hr1G117640.3
Wheat TraesCS7A02G273000 , TraesCS7A02G534800 , TraesCS7D02G522000 , TraesCS7B02G452400 , TraesCS7B02G452400
Populus -


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cDNA sequences
Sobic.010G268200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G026700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
2 Sobic.002G136900 - -
3 Sobic.002G095900 - -
4 Sobic.008G000900 - -
5 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
6 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.008G177850 - -
8 Sobic.008G125600 - -
9 Sobic.001G279200 PHLOEM 2-LIKE A10, putative, expressed -
10 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
11 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
12 Sobic.001G030500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
13 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
14 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
15 Sobic.007G197400 pentatricopeptide, putative, expressed -
16 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
17 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
18 Sobic.008G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
19 Sobic.001G151900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF593 domain containing protein, expressed -
20 Sobic.007G112700 - -


Gene co-expression network
sample Sobic010G268200 Sobic010G268200 Sobic003G026700 Sobic003G026700 Sobic010G268200--Sobic003G026700 Sobic002G136900 Sobic002G136900 Sobic010G268200--Sobic002G136900 Sobic002G095900 Sobic002G095900 Sobic010G268200--Sobic002G095900 Sobic008G000900 Sobic008G000900 Sobic010G268200--Sobic008G000900 Sobic001G341800 Sobic001G341800 Sobic010G268200--Sobic001G341800 Sobic006G042200 Sobic006G042200 Sobic010G268200--Sobic006G042200 Sobic008G177850 Sobic008G177850 Sobic010G268200--Sobic008G177850 Sobic008G125600 Sobic008G125600 Sobic010G268200--Sobic008G125600 Sobic001G279200 Sobic001G279200 Sobic010G268200--Sobic001G279200 Sobic003G107300 Sobic003G107300 Sobic003G026700--Sobic003G107300 Sobic001G093600 Sobic001G093600 Sobic003G026700--Sobic001G093600 Sobic001G423100 Sobic001G423100 Sobic003G026700--Sobic001G423100 Sobic003G026700--Sobic008G177850 Sobic009G154600 Sobic009G154600 Sobic003G026700--Sobic009G154600 Sobic007G191900 Sobic007G191900 Sobic003G026700--Sobic007G191900 Sobic009G253000 Sobic009G253000 Sobic003G026700--Sobic009G253000 Sobic003G255100 Sobic003G255100 Sobic003G026700--Sobic003G255100 Sobic003G406700 Sobic003G406700 Sobic003G026700--Sobic003G406700 Sobic007G112700 Sobic007G112700 Sobic002G136900--Sobic007G112700 Sobic002G136900--Sobic010G268200 Sobic002G136900--Sobic002G095900 Sobic002G212800 Sobic002G212800 Sobic002G136900--Sobic002G212800 Sobic003G159450 Sobic003G159450 Sobic002G136900--Sobic003G159450 Sobic009G029500 Sobic009G029500 Sobic002G136900--Sobic009G029500 Sobic003G368800 Sobic003G368800 Sobic002G136900--Sobic003G368800 Sobic009G103500 Sobic009G103500 Sobic002G136900--Sobic009G103500 Sobic008G068601 Sobic008G068601 Sobic002G136900--Sobic008G068601 Sobic002G095900--Sobic003G159450 Sobic002G095900--Sobic008G125600 Sobic009G197200 Sobic009G197200 Sobic002G095900--Sobic009G197200 Sobic001G225500 Sobic001G225500 Sobic002G095900--Sobic001G225500 Sobic010G143200 Sobic010G143200 Sobic002G095900--Sobic010G143200 Sobic003G061000 Sobic003G061000 Sobic002G095900--Sobic003G061000 Sobic007G179750 Sobic007G179750 Sobic002G095900--Sobic007G179750 Sobic009G067501 Sobic009G067501 Sobic002G095900--Sobic009G067501 Sobic001G191200 Sobic001G191200 Sobic002G095900--Sobic001G191200 Sobic003G174800 Sobic003G174800 Sobic008G000900--Sobic003G174800 Sobic008G000900--Sobic008G125600 Sobic008G000900--Sobic010G143200 Sobic004G062800 Sobic004G062800 Sobic008G000900--Sobic004G062800 Sobic008G125501 Sobic008G125501 Sobic008G000900--Sobic008G125501 Sobic006G214400 Sobic006G214400 Sobic008G000900--Sobic006G214400 Sobic001G087100 Sobic001G087100 Sobic008G000900--Sobic001G087100 Sobic008G000900--Sobic003G159450 Sobic008G091671 Sobic008G091671 Sobic008G000900--Sobic008G091671 Sobic009G190800 Sobic009G190800 Sobic001G341800--Sobic009G190800 Sobic002G404200 Sobic002G404200 Sobic001G341800--Sobic002G404200 Sobic007G029100 Sobic007G029100 Sobic001G341800--Sobic007G029100 Sobic001G202500 Sobic001G202500 Sobic001G341800--Sobic001G202500 Sobic009G036300 Sobic009G036300 Sobic001G341800--Sobic009G036300 Sobic001G324400 Sobic001G324400 Sobic001G341800--Sobic001G324400 Sobic002G281800 Sobic002G281800 Sobic001G341800--Sobic002G281800 Sobic007G168200 Sobic007G168200 Sobic001G341800--Sobic007G168200 Sobic001G367500 Sobic001G367500 Sobic001G341800--Sobic001G367500 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic007G054100 Sobic007G054100 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic002G073900 Sobic002G073900 Sobic006G042200--Sobic002G073900 Sobic002G040800 Sobic002G040800 Sobic006G042200--Sobic002G040800 Sobic003G222300 Sobic003G222300 Sobic008G177850--Sobic003G222300 Sobic001G076200 Sobic001G076200 Sobic008G177850--Sobic001G076200 Sobic004G055600 Sobic004G055600 Sobic008G177850--Sobic004G055600 Sobic008G101500 Sobic008G101500 Sobic008G177850--Sobic008G101500 Sobic004G249500 Sobic004G249500 Sobic008G177850--Sobic004G249500 Sobic008G177850--Sobic003G026700 Sobic010G258300 Sobic010G258300 Sobic008G177850--Sobic010G258300 Sobic008G177850--Sobic001G093600 Sobic009G136900 Sobic009G136900 Sobic008G177850--Sobic009G136900 Sobic008G125600--Sobic008G125501 Sobic008G125600--Sobic008G000900 Sobic008G125600--Sobic003G159450 Sobic001G111900 Sobic001G111900 Sobic008G125600--Sobic001G111900 Sobic003G088700 Sobic003G088700 Sobic008G125600--Sobic003G088700 Sobic007G112900 Sobic007G112900 Sobic008G125600--Sobic007G112900 Sobic008G125600--Sobic004G062800 Sobic010G056000 Sobic010G056000 Sobic008G125600--Sobic010G056000 Sobic001G454401 Sobic001G454401 Sobic008G125600--Sobic001G454401 Sobic002G174900 Sobic002G174900 Sobic001G279200--Sobic002G174900 Sobic008G165700 Sobic008G165700 Sobic001G279200--Sobic008G165700 Sobic009G213400 Sobic009G213400 Sobic001G279200--Sobic009G213400 Sobic006G171700 Sobic006G171700 Sobic001G279200--Sobic006G171700 Sobic001G279200--Sobic006G042200 Sobic001G151900 Sobic001G151900 Sobic001G279200--Sobic001G151900 Sobic001G222900 Sobic001G222900 Sobic001G279200--Sobic001G222900 Sobic003G151800 Sobic003G151800 Sobic001G279200--Sobic003G151800 Sobic001G279200--Sobic007G054100
Octagon: transcription factors


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