Gene annotation
Transcriptome id Sobic.008G059400.1
Synonym ATAAP3, AAP3, Sb08g005010
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid transporter, putative, expressed
UniProt A0A1B6PBU7
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF290
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77380 : amino acid permease 3
RAP-DB (Rice) LOC_Os12g08090.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a025708 , Zm00025a030927 , Zm00025a054079 , Zm00025a051054 , Zm00025a034135 , Zm00025a009452 , Zm00025a026558 , Zm00025a054084 , Zm00025a025707 , Zm00025a054081 , Zm00025a054082 , Zm00025a051049 , Zm00025a012741 , Zm00025a021860 , Zm00025a037366
Brachypodium PNT76161 , PNT76162 , PNT69503 , KQJ91992 , KQJ91991 , PNT61270 , PNT61269 , PNT61268 , PNT71213 , KQK01542 , PNT71214 , KQK18868 , KQK18866 , KQK18867 , KQJ89071 , KQK06164 , KQJ83307 , KQK10853 , KQK10901 , KQK18009 , KQK10902
Barley HORVU5Hr1G037660.9 , HORVU5Hr1G037660.8 , HORVU5Hr1G037660.5 , HORVU5Hr1G037660.4 , HORVU5Hr1G037660.7 , HORVU5Hr1G037660.6 , HORVU5Hr1G037660.1 , HORVU5Hr1G037660.3 , HORVU7Hr1G088560.8 , HORVU7Hr1G088560.6 , HORVU7Hr1G088560.7 , HORVU7Hr1G088560.4 , HORVU7Hr1G088560.5 , HORVU7Hr1G088560.2 , HORVU7Hr1G088560.3 , HORVU7Hr1G088560.1 , HORVU7Hr1G038330.8 , HORVU7Hr1G038330.1 , HORVU7Hr1G038330.2 , HORVU7Hr1G038330.3 , HORVU7Hr1G038330.4 , HORVU7Hr1G038330.5 , HORVU7Hr1G038330.6 , HORVU7Hr1G038330.7 , HORVU1Hr1G064970.10 , HORVU1Hr1G064970.12 , HORVU2Hr1G084800.1 , HORVU2Hr1G084780.9 , HORVU2Hr1G084780.8 , HORVU2Hr1G084780.7 , HORVU2Hr1G084780.6 , HORVU2Hr1G084780.5 , HORVU2Hr1G084780.4 , HORVU2Hr1G084780.3 , HORVU2Hr1G084780.2 , HORVU2Hr1G084780.1 , HORVU4Hr1G043680.1 , HORVU4Hr1G043680.3 , HORVU4Hr1G043680.2 , HORVU4Hr1G043680.5 , HORVU4Hr1G043680.4 , HORVU5Hr1G037030.2 , HORVU1Hr1G064970.9 , HORVU1Hr1G064970.8 , HORVU1Hr1G064970.1 , HORVU1Hr1G064970.3 , HORVU1Hr1G064970.5 , HORVU1Hr1G064970.4 , HORVU1Hr1G064970.6 , HORVU2Hr1G061190.7 , HORVU2Hr1G061190.5 , HORVU2Hr1G061190.4 , HORVU2Hr1G061190.3 , HORVU2Hr1G061190.2 , HORVU2Hr1G061190.1 , HORVU2Hr1G081790.8 , HORVU2Hr1G081790.3 , HORVU2Hr1G081790.2 , HORVU2Hr1G081790.1 , HORVU2Hr1G081790.6 , HORVU2Hr1G081790.5 , HORVU2Hr1G081790.4
Wheat TraesCS2D02G500000 , TraesCS2D02G331800 , TraesCS2D02G331800 , TraesCS4B02G100800 , TraesCS1A02G264500 , TraesCS4D02G097400 , TraesCS2A02G331100 , TraesCS2A02G331100 , TraesCS7A02G188200 , TraesCS2A02G499800 , TraesCS5B02G116100 , TraesCS7A02G356600 , TraesCS2D02G256000 , TraesCS2B02G527800 , TraesCS2A02G268200 , TraesCS1D02G264700 , TraesCS2B02G266600 , TraesCS7B02G271200 , TraesCS4A02G215300 , TraesCS5A02G115100 , TraesCS5D02G125700 , TraesCS1B02G275200 , TraesCS2B02G367000 , TraesCS2D02G347000 , TraesCS2D02G346500 , TraesCS7D02G189000 , TraesCS7D02G366200 , TraesCS7B02G093200 , TraesCS2A02G348600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G059400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G064800 "Production of (E)-b-caryophyllene, cytoplasm"(PubMedID : 21880075)@Protein terpene synthase 6 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
2 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
3 Sobic.002G160600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
4 Sobic.010G197700 cytochrome P450, putative, expressed -
5 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.010G268200 zinc finger, C3HC4 type, domain containing protein, expressed -
7 Sobic.001G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAS family transcription factor domain containing protein, expressed -
8 Sobic.004G176900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.002G207300 tetraspanin family protein, putative, expressed -
10 Sobic.008G075400 - -
11 Sobic.005G218500 Jacalin-like lectin domain containing protein, putative, expressed -
12 Sobic.005G090600 peptide transporter PTR2, putative, expressed -
13 Sobic.003G376200 expressed protein -
14 Sobic.003G026700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
15 Sobic.001G351100 LOL3, putative, expressed -
16 Sobic.007G183100 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.001G118900 DUF292 domain containing protein, expressed -
18 Sobic.001G041500 basic helix-loop-helix, putative, expressed -
19 Sobic.007G014600 transferase family protein, putative, expressed -
20 Sobic.008G065800 - -


Gene co-expression network
sample Sobic008G059400 Sobic008G059400 Sobic007G064800 Sobic007G064800 Sobic008G059400--Sobic007G064800 Sobic007G124100 Sobic007G124100 Sobic008G059400--Sobic007G124100 Sobic002G160600 Sobic002G160600 Sobic008G059400--Sobic002G160600 Sobic010G197700 Sobic010G197700 Sobic008G059400--Sobic010G197700 Sobic001G161200 Sobic001G161200 Sobic008G059400--Sobic001G161200 Sobic010G268200 Sobic010G268200 Sobic008G059400--Sobic010G268200 Sobic001G109100 Sobic001G109100 Sobic008G059400--Sobic001G109100 Sobic004G176900 Sobic004G176900 Sobic008G059400--Sobic004G176900 Sobic002G207300 Sobic002G207300 Sobic008G059400--Sobic002G207300 Sobic007G064800--Sobic002G160600 Sobic007G183100 Sobic007G183100 Sobic007G064800--Sobic007G183100 Sobic002G216400 Sobic002G216400 Sobic007G064800--Sobic002G216400 Sobic005G218500 Sobic005G218500 Sobic007G064800--Sobic005G218500 Sobic007G064800--Sobic004G176900 Sobic007G064800--Sobic008G059400 Sobic008G075400 Sobic008G075400 Sobic007G064800--Sobic008G075400 Sobic001G095750 Sobic001G095750 Sobic007G064800--Sobic001G095750 Sobic001G462800 Sobic001G462800 Sobic007G064800--Sobic001G462800 Sobic007G124100--Sobic002G207300 Sobic007G139900 Sobic007G139900 Sobic007G124100--Sobic007G139900 Sobic001G118900 Sobic001G118900 Sobic007G124100--Sobic001G118900 Sobic002G367900 Sobic002G367900 Sobic007G124100--Sobic002G367900 Sobic007G124100--Sobic001G161200 Sobic004G065900 Sobic004G065900 Sobic007G124100--Sobic004G065900 Sobic009G028500 Sobic009G028500 Sobic007G124100--Sobic009G028500 Sobic007G124100--Sobic004G176900 Sobic003G131500 Sobic003G131500 Sobic007G124100--Sobic003G131500 Sobic002G160600--Sobic007G064800 Sobic006G014700 Sobic006G014700 Sobic002G160600--Sobic006G014700 Sobic002G160600--Sobic005G218500 Sobic002G216500 Sobic002G216500 Sobic002G160600--Sobic002G216500 Sobic001G314800 Sobic001G314800 Sobic002G160600--Sobic001G314800 Sobic002G160600--Sobic008G075400 Sobic004G140000 Sobic004G140000 Sobic002G160600--Sobic004G140000 Sobic006G265000 Sobic006G265000 Sobic002G160600--Sobic006G265000 Sobic002G160600--Sobic007G183100 Sobic001G278600 Sobic001G278600 Sobic010G197700--Sobic001G278600 Sobic008G065400 Sobic008G065400 Sobic010G197700--Sobic008G065400 Sobic008G052500 Sobic008G052500 Sobic010G197700--Sobic008G052500 Sobic010G054500 Sobic010G054500 Sobic010G197700--Sobic010G054500 Sobic001G140200 Sobic001G140200 Sobic010G197700--Sobic001G140200 Sobic003G374500 Sobic003G374500 Sobic010G197700--Sobic003G374500 Sobic007G064250 Sobic007G064250 Sobic010G197700--Sobic007G064250 Sobic003G266700 Sobic003G266700 Sobic010G197700--Sobic003G266700 Sobic008G065800 Sobic008G065800 Sobic010G197700--Sobic008G065800 Sobic001G161200--Sobic001G118900 Sobic006G205200 Sobic006G205200 Sobic001G161200--Sobic006G205200 Sobic001G161200--Sobic002G207300 Sobic001G161200--Sobic004G065900 Sobic001G161200--Sobic003G131500 Sobic001G161200--Sobic001G095750 Sobic001G216300 Sobic001G216300 Sobic001G161200--Sobic001G216300 Sobic001G161200--Sobic002G367900 Sobic001G041500 Sobic001G041500 Sobic001G161200--Sobic001G041500 Sobic003G026700 Sobic003G026700 Sobic010G268200--Sobic003G026700 Sobic002G136900 Sobic002G136900 Sobic010G268200--Sobic002G136900 Sobic002G095900 Sobic002G095900 Sobic010G268200--Sobic002G095900 Sobic008G000900 Sobic008G000900 Sobic010G268200--Sobic008G000900 Sobic001G341800 Sobic001G341800 Sobic010G268200--Sobic001G341800 Sobic006G042200 Sobic006G042200 Sobic010G268200--Sobic006G042200 Sobic008G177850 Sobic008G177850 Sobic010G268200--Sobic008G177850 Sobic008G125600 Sobic008G125600 Sobic010G268200--Sobic008G125600 Sobic001G279200 Sobic001G279200 Sobic010G268200--Sobic001G279200 Sobic004G337500 Sobic004G337500 Sobic001G109100--Sobic004G337500 Sobic002G192101 Sobic002G192101 Sobic001G109100--Sobic002G192101 Sobic004G283400 Sobic004G283400 Sobic001G109100--Sobic004G283400 Sobic008G166700 Sobic008G166700 Sobic001G109100--Sobic008G166700 Sobic005G090600 Sobic005G090600 Sobic001G109100--Sobic005G090600 Sobic007G136700 Sobic007G136700 Sobic001G109100--Sobic007G136700 Sobic001G044800 Sobic001G044800 Sobic001G109100--Sobic001G044800 Sobic004G281300 Sobic004G281300 Sobic001G109100--Sobic004G281300 Sobic001G109100--Sobic008G059400 Sobic009G068900 Sobic009G068900 Sobic004G176900--Sobic009G068900 Sobic004G244100 Sobic004G244100 Sobic004G176900--Sobic004G244100 Sobic002G197600 Sobic002G197600 Sobic004G176900--Sobic002G197600 Sobic009G167000 Sobic009G167000 Sobic004G176900--Sobic009G167000 Sobic009G212800 Sobic009G212800 Sobic004G176900--Sobic009G212800 Sobic006G203000 Sobic006G203000 Sobic004G176900--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic004G176900--Sobic002G037400 Sobic008G058900 Sobic008G058900 Sobic004G176900--Sobic008G058900 Sobic004G176900--Sobic002G367900 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic007G201100 Sobic007G201100 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.