Gene annotation
Transcriptome id Sobic.001G041500.2,Sobic.001G041500.1,Sobic.001G041500.3
Synonym Sb01g003830
Functional annotation basic helix-loop-helix, putative, expressed
UniProt A0A1Z5S494 , A0A1Z5S4A9 , C5WW01
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF158
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41130 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g59670.1 : basic helix-loop-helix, putative, expressed
MaizeGDB (Corn) Zm00025a008738 , Zm00025a008737
Brachypodium KQK12528 , KQK12527
Barley -
Wheat TraesCS5D02G479100 , TraesCS5A02G466300 , TraesCS5B02G478000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G023900 Homeobox domain containing protein, expressed -
2 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.006G026400 - -
4 Sobic.004G176900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
5 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
6 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
7 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
8 Sobic.009G076700 expressed protein -
9 Sobic.009G076500 expressed protein -
10 Sobic.001G075101 - -
11 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
12 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
13 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
14 Sobic.003G087100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
16 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
17 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
18 Sobic.010G054500 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
19 Sobic.008G040900 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
20 Sobic.008G075600 - -


Gene co-expression network
sample Sobic001G041500 Sobic001G041500 Sobic002G023900 Sobic002G023900 Sobic001G041500--Sobic002G023900 Sobic004G244100 Sobic004G244100 Sobic001G041500--Sobic004G244100 Sobic006G026400 Sobic006G026400 Sobic001G041500--Sobic006G026400 Sobic004G176900 Sobic004G176900 Sobic001G041500--Sobic004G176900 Sobic006G203000 Sobic006G203000 Sobic001G041500--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic001G041500--Sobic002G037400 Sobic008G059000 Sobic008G059000 Sobic001G041500--Sobic008G059000 Sobic009G076700 Sobic009G076700 Sobic001G041500--Sobic009G076700 Sobic009G076500 Sobic009G076500 Sobic001G041500--Sobic009G076500 Sobic001G075101 Sobic001G075101 Sobic002G023900--Sobic001G075101 Sobic002G023900--Sobic006G203000 Sobic007G153001 Sobic007G153001 Sobic002G023900--Sobic007G153001 Sobic002G023900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic002G023900--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic002G023900--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G023900--Sobic002G331450 Sobic003G040800 Sobic003G040800 Sobic002G023900--Sobic003G040800 Sobic001G106000 Sobic001G106000 Sobic002G023900--Sobic001G106000 Sobic003G268900 Sobic003G268900 Sobic004G244100--Sobic003G268900 Sobic006G194600 Sobic006G194600 Sobic004G244100--Sobic006G194600 Sobic004G244300 Sobic004G244300 Sobic004G244100--Sobic004G244300 Sobic004G281200 Sobic004G281200 Sobic004G244100--Sobic004G281200 Sobic009G167000 Sobic009G167000 Sobic004G244100--Sobic009G167000 Sobic010G016500 Sobic010G016500 Sobic004G244100--Sobic010G016500 Sobic002G217100 Sobic002G217100 Sobic004G244100--Sobic002G217100 Sobic004G244100--Sobic006G203000 Sobic004G244100--Sobic006G026400 Sobic006G026400--Sobic002G037400 Sobic006G026400--Sobic006G203000 Sobic006G026400--Sobic006G194600 Sobic006G026400--Sobic007G169600 Sobic006G026400--Sobic001G075101 Sobic006G026400--Sobic009G076700 Sobic006G026400--Sobic009G076500 Sobic006G026400--Sobic003G083000 Sobic006G026400--Sobic004G244100 Sobic009G068900 Sobic009G068900 Sobic004G176900--Sobic009G068900 Sobic004G176900--Sobic004G244100 Sobic002G197600 Sobic002G197600 Sobic004G176900--Sobic002G197600 Sobic004G176900--Sobic009G167000 Sobic009G212800 Sobic009G212800 Sobic004G176900--Sobic009G212800 Sobic004G176900--Sobic006G203000 Sobic004G176900--Sobic002G037400 Sobic008G058900 Sobic008G058900 Sobic004G176900--Sobic008G058900 Sobic002G367900 Sobic002G367900 Sobic004G176900--Sobic002G367900 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic002G037400--Sobic006G026400 Sobic002G037400--Sobic009G076700 Sobic007G143100 Sobic007G143100 Sobic002G037400--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic002G037400--Sobic005G016900 Sobic008G059000--Sobic004G281200 Sobic008G059000--Sobic008G058900 Sobic002G021300 Sobic002G021300 Sobic008G059000--Sobic002G021300 Sobic003G087100 Sobic003G087100 Sobic008G059000--Sobic003G087100 Sobic008G059000--Sobic006G194600 Sobic008G059000--Sobic009G167000 Sobic008G059000--Sobic004G244100 Sobic008G059000--Sobic009G076500 Sobic008G059000--Sobic010G016500 Sobic009G076700--Sobic007G143100 Sobic007G073750 Sobic007G073750 Sobic009G076700--Sobic007G073750 Sobic009G076700--Sobic005G016900 Sobic007G143200 Sobic007G143200 Sobic009G076700--Sobic007G143200 Sobic003G397400 Sobic003G397400 Sobic009G076700--Sobic003G397400 Sobic009G076700--Sobic007G169600 Sobic009G076700--Sobic002G037400 Sobic009G076700--Sobic003G083000 Sobic010G253500 Sobic010G253500 Sobic009G076700--Sobic010G253500 Sobic009G076500--Sobic002G021300 Sobic009G076500--Sobic009G076700 Sobic009G076500--Sobic002G037400 Sobic009G076500--Sobic006G026400 Sobic009G076500--Sobic006G203000 Sobic009G076500--Sobic009G167000 Sobic009G076500--Sobic004G244100 Sobic009G076500--Sobic008G059000 Sobic009G076500--Sobic006G194600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.