Gene annotation
Transcriptome id Sobic.008G040900.2,Sobic.008G040900.1,Sobic.008G040900.3,Sobic.008G040900.4,Sobic.008G040900.5
Synonym Sb08g003530, ATCAT6, CAT6
Functional annotation amino acid permease family protein, putative, expressed
UniProt A0A1Z5R4S6 , A0A1Z5R4U7 , A0A1B6PBK8
Pfam PF13906 PF00324 PF00324 PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF331
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K03294; basic amino acid/polyamine antiporter, APA family
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport GO:0016020membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G10600 : cationic amino acid transporter 7,cationic amino acid transporter 6
RAP-DB (Rice) LOC_Os11g05690.2,LOC_Os12g06060.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056650 , Zm00025a033523 , Zm00025a053930
Brachypodium KQJ83872 , KQJ92187 , KQJ92188
Barley HORVU5Hr1G040540.20 , HORVU5Hr1G040540.2 , HORVU5Hr1G040540.3 , HORVU5Hr1G040540.1 , HORVU5Hr1G040540.6 , HORVU5Hr1G040540.7 , HORVU5Hr1G040540.4 , HORVU5Hr1G040540.5 , HORVU5Hr1G040540.8 , HORVU5Hr1G040540.9 , HORVU0Hr1G016470.1 , HORVU5Hr1G040540.10 , HORVU5Hr1G040540.11 , HORVU5Hr1G040540.12 , HORVU5Hr1G040540.13 , HORVU5Hr1G040540.14 , HORVU5Hr1G040540.15 , HORVU5Hr1G040540.16 , HORVU5Hr1G040540.17 , HORVU5Hr1G040540.18 , HORVU5Hr1G040540.19
Wheat TraesCS5D02G134500 , TraesCS5A02G126900 , TraesCS2B02G409100 , TraesCS5B02G126000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
2 Sobic.001G075101 - -
3 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
4 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
5 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
6 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.006G026400 - -
8 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
9 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
10 Sobic.009G076700 expressed protein -
11 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
12 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
13 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
14 Sobic.002G023900 Homeobox domain containing protein, expressed -
15 Sobic.007G073750 - -
16 Sobic.010G054500 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
17 Sobic.007G153001 - -
18 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
19 Sobic.009G076500 expressed protein -
20 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi


Gene co-expression network
sample Sobic008G040900 Sobic008G040900 Sobic006G194600 Sobic006G194600 Sobic008G040900--Sobic006G194600 Sobic001G075101 Sobic001G075101 Sobic008G040900--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic008G040900--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic008G040900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic008G040900--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic008G040900--Sobic003G083000 Sobic006G026400 Sobic006G026400 Sobic008G040900--Sobic006G026400 Sobic005G016900 Sobic005G016900 Sobic008G040900--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic008G040900--Sobic007G143100 Sobic004G244300 Sobic004G244300 Sobic006G194600--Sobic004G244300 Sobic006G194600--Sobic006G026400 Sobic004G244100 Sobic004G244100 Sobic006G194600--Sobic004G244100 Sobic010G016500 Sobic010G016500 Sobic006G194600--Sobic010G016500 Sobic004G281200 Sobic004G281200 Sobic006G194600--Sobic004G281200 Sobic006G194600--Sobic006G203000 Sobic009G167000 Sobic009G167000 Sobic006G194600--Sobic009G167000 Sobic006G194600--Sobic002G037400 Sobic008G059000 Sobic008G059000 Sobic006G194600--Sobic008G059000 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic001G075101--Sobic002G331450 Sobic007G153001 Sobic007G153001 Sobic001G075101--Sobic007G153001 Sobic002G325600 Sobic002G325600 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic001G075101--Sobic002G182800 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic002G037400--Sobic007G143100 Sobic002G037400--Sobic005G016900 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic007G169600--Sobic007G143200 Sobic003G083000--Sobic007G169600 Sobic003G083000--Sobic001G075101 Sobic003G083000--Sobic002G331450 Sobic003G083000--Sobic002G037400 Sobic003G083000--Sobic006G203000 Sobic003G083000--Sobic005G016900 Sobic003G083000--Sobic007G143100 Sobic003G083000--Sobic002G325600 Sobic003G083000--Sobic007G143200 Sobic006G026400--Sobic002G037400 Sobic006G026400--Sobic006G203000 Sobic006G026400--Sobic006G194600 Sobic006G026400--Sobic007G169600 Sobic006G026400--Sobic001G075101 Sobic006G026400--Sobic009G076700 Sobic009G076500 Sobic009G076500 Sobic006G026400--Sobic009G076500 Sobic006G026400--Sobic003G083000 Sobic006G026400--Sobic004G244100 Sobic005G016900--Sobic007G143100 Sobic007G073750 Sobic007G073750 Sobic005G016900--Sobic007G073750 Sobic005G016900--Sobic007G143200 Sobic005G016900--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic005G016900--Sobic003G397400 Sobic005G016900--Sobic007G169600 Sobic005G016900--Sobic003G083000 Sobic005G016900--Sobic002G037400 Sobic005G016900--Sobic001G075101 Sobic007G143100--Sobic007G143200 Sobic007G143100--Sobic005G016900 Sobic007G143100--Sobic007G073750 Sobic007G143100--Sobic009G076700 Sobic007G143100--Sobic003G397400 Sobic007G143100--Sobic007G169600 Sobic007G143100--Sobic003G083000 Sobic007G143100--Sobic002G037400 Sobic007G143100--Sobic001G075101
Octagon: transcription factors


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