Gene annotation
Transcriptome id Sobic.001G075800.2,Sobic.001G075800.3,Sobic.001G075800.4,Sobic.001G075800.1
Synonym Sb01g006840
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QHR6 , A0A1Z5S5A4 , A0A1B6QHS8
Pfam PF00076 PF14259 PF00076
Panther DB PTHR24012 PTHR24012:SF489
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07810 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g03240.1,LOC_Os07g39560.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008339 , Zm00025a008340
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
2 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
3 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
4 Sobic.001G075101 - -
5 Sobic.009G167000 expressed protein -
6 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
7 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
8 Sobic.006G026400 - -
9 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
10 Sobic.006G078300 - -
11 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
12 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
13 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
14 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
15 Sobic.002G023900 Homeobox domain containing protein, expressed -
16 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
17 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
18 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.004G300300 Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed -
20 Sobic.009G159900 homeodomain protein, putative, expressed -


Gene co-expression network
sample Sobic001G075800 Sobic001G075800 Sobic002G037400 Sobic002G037400 Sobic001G075800--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic001G075800--Sobic006G203000 Sobic004G244100 Sobic004G244100 Sobic001G075800--Sobic004G244100 Sobic001G075101 Sobic001G075101 Sobic001G075800--Sobic001G075101 Sobic009G167000 Sobic009G167000 Sobic001G075800--Sobic009G167000 Sobic004G244300 Sobic004G244300 Sobic001G075800--Sobic004G244300 Sobic001G050800 Sobic001G050800 Sobic001G075800--Sobic001G050800 Sobic006G026400 Sobic006G026400 Sobic001G075800--Sobic006G026400 Sobic004G281200 Sobic004G281200 Sobic001G075800--Sobic004G281200 Sobic002G037400--Sobic006G203000 Sobic007G169600 Sobic007G169600 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic003G083000 Sobic003G083000 Sobic002G037400--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G037400--Sobic002G331450 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic007G143100 Sobic007G143100 Sobic002G037400--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic002G037400--Sobic005G016900 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic003G268900 Sobic003G268900 Sobic004G244100--Sobic003G268900 Sobic006G194600 Sobic006G194600 Sobic004G244100--Sobic006G194600 Sobic004G244100--Sobic004G244300 Sobic004G244100--Sobic004G281200 Sobic004G244100--Sobic009G167000 Sobic010G016500 Sobic010G016500 Sobic004G244100--Sobic010G016500 Sobic002G217100 Sobic002G217100 Sobic004G244100--Sobic002G217100 Sobic004G244100--Sobic006G203000 Sobic004G244100--Sobic006G026400 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic007G153001 Sobic007G153001 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic001G075101--Sobic002G182800 Sobic002G021300 Sobic002G021300 Sobic009G167000--Sobic002G021300 Sobic009G167000--Sobic004G244300 Sobic009G167000--Sobic006G194600 Sobic009G167000--Sobic004G244100 Sobic009G167000--Sobic004G281200 Sobic009G167000--Sobic002G217100 Sobic009G076500 Sobic009G076500 Sobic009G167000--Sobic009G076500 Sobic008G058900 Sobic008G058900 Sobic009G167000--Sobic008G058900 Sobic008G059000 Sobic008G059000 Sobic009G167000--Sobic008G059000 Sobic004G244300--Sobic004G281200 Sobic004G244300--Sobic006G194600 Sobic004G244300--Sobic010G016500 Sobic004G244300--Sobic006G203000 Sobic004G244300--Sobic004G244100 Sobic004G244300--Sobic009G167000 Sobic004G244300--Sobic002G217100 Sobic004G244300--Sobic002G037400 Sobic004G244300--Sobic001G075101 Sobic001G157400 Sobic001G157400 Sobic001G050800--Sobic001G157400 Sobic009G170100 Sobic009G170100 Sobic001G050800--Sobic009G170100 Sobic001G050800--Sobic006G194600 Sobic001G050800--Sobic006G026400 Sobic006G032200 Sobic006G032200 Sobic001G050800--Sobic006G032200 Sobic001G050800--Sobic004G281200 Sobic001G050800--Sobic004G244300 Sobic001G050800--Sobic004G244100 Sobic002G068800 Sobic002G068800 Sobic001G050800--Sobic002G068800 Sobic006G026400--Sobic002G037400 Sobic006G026400--Sobic006G203000 Sobic006G026400--Sobic006G194600 Sobic006G026400--Sobic007G169600 Sobic006G026400--Sobic001G075101 Sobic006G026400--Sobic009G076700 Sobic006G026400--Sobic009G076500 Sobic006G026400--Sobic003G083000 Sobic006G026400--Sobic004G244100 Sobic004G281200--Sobic010G016500 Sobic004G281200--Sobic004G244300 Sobic004G281200--Sobic008G059000 Sobic004G281200--Sobic006G194600 Sobic004G281200--Sobic006G203000 Sobic004G281200--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic004G281200--Sobic006G210300 Sobic001G081600 Sobic001G081600 Sobic004G281200--Sobic001G081600 Sobic004G281200--Sobic004G244100
Octagon: transcription factors


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