Gene annotation
Transcriptome id Sobic.002G160600.2
Synonym Sb02g020430
Functional annotation indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
UniProt A0A1W0W498
Pfam PF00218
Panther DB PTHR22854 PTHR22854:SF14
NCBI CDD KOG4201; Anthranilate synthase component II
KEGG Orthology K01609; indole-3-glycerol phosphate synthase
Gene Ontology GO:0004425; indole-3-glycerol-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT2G04400 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os09g08130.2 : indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a046351
Brachypodium PNT62846
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G064800 "Production of (E)-b-caryophyllene, cytoplasm"(PubMedID : 21880075)@Protein terpene synthase 6 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
2 Sobic.006G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
3 Sobic.005G218500 Jacalin-like lectin domain containing protein, putative, expressed -
4 Sobic.002G216500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.008G075400 - -
7 Sobic.004G140000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
8 Sobic.006G265000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
9 Sobic.007G183100 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.001G044800 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
11 Sobic.004G092000 expressed protein -
12 Sobic.010G214200 OsFBK17 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.003G376200 expressed protein -
14 Sobic.004G220600 phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
15 Sobic.007G035500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Protein aromatic-L-amino-acid decarboxylase (Os)(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
16 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
17 Sobic.003G213900 expressed protein -
18 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
19 Sobic.005G090600 peptide transporter PTR2, putative, expressed -
20 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G160600 Sobic002G160600 Sobic007G064800 Sobic007G064800 Sobic002G160600--Sobic007G064800 Sobic006G014700 Sobic006G014700 Sobic002G160600--Sobic006G014700 Sobic005G218500 Sobic005G218500 Sobic002G160600--Sobic005G218500 Sobic002G216500 Sobic002G216500 Sobic002G160600--Sobic002G216500 Sobic001G314800 Sobic001G314800 Sobic002G160600--Sobic001G314800 Sobic008G075400 Sobic008G075400 Sobic002G160600--Sobic008G075400 Sobic004G140000 Sobic004G140000 Sobic002G160600--Sobic004G140000 Sobic006G265000 Sobic006G265000 Sobic002G160600--Sobic006G265000 Sobic007G183100 Sobic007G183100 Sobic002G160600--Sobic007G183100 Sobic007G064800--Sobic002G160600 Sobic007G064800--Sobic007G183100 Sobic002G216400 Sobic002G216400 Sobic007G064800--Sobic002G216400 Sobic007G064800--Sobic005G218500 Sobic004G176900 Sobic004G176900 Sobic007G064800--Sobic004G176900 Sobic008G059400 Sobic008G059400 Sobic007G064800--Sobic008G059400 Sobic007G064800--Sobic008G075400 Sobic001G095750 Sobic001G095750 Sobic007G064800--Sobic001G095750 Sobic001G462800 Sobic001G462800 Sobic007G064800--Sobic001G462800 Sobic006G014700--Sobic001G314800 Sobic006G014700--Sobic002G216500 Sobic006G014700--Sobic002G160600 Sobic003G310500 Sobic003G310500 Sobic006G014700--Sobic003G310500 Sobic006G014700--Sobic006G265000 Sobic009G216050 Sobic009G216050 Sobic006G014700--Sobic009G216050 Sobic010G214200 Sobic010G214200 Sobic006G014700--Sobic010G214200 Sobic002G407200 Sobic002G407200 Sobic006G014700--Sobic002G407200 Sobic008G018600 Sobic008G018600 Sobic006G014700--Sobic008G018600 Sobic003G378301 Sobic003G378301 Sobic005G218500--Sobic003G378301 Sobic005G218500--Sobic002G216500 Sobic001G056400 Sobic001G056400 Sobic005G218500--Sobic001G056400 Sobic005G218500--Sobic008G075400 Sobic005G218500--Sobic002G160600 Sobic004G220600 Sobic004G220600 Sobic005G218500--Sobic004G220600 Sobic007G076000 Sobic007G076000 Sobic005G218500--Sobic007G076000 Sobic005G182701 Sobic005G182701 Sobic005G218500--Sobic005G182701 Sobic007G055600 Sobic007G055600 Sobic005G218500--Sobic007G055600 Sobic002G216500--Sobic004G220600 Sobic006G045000 Sobic006G045000 Sobic002G216500--Sobic006G045000 Sobic002G216500--Sobic005G218500 Sobic002G216500--Sobic010G214200 Sobic004G209500 Sobic004G209500 Sobic002G216500--Sobic004G209500 Sobic002G216500--Sobic006G014700 Sobic002G216500--Sobic003G378301 Sobic002G216500--Sobic003G310500 Sobic004G217700 Sobic004G217700 Sobic002G216500--Sobic004G217700 Sobic001G195100 Sobic001G195100 Sobic001G314800--Sobic001G195100 Sobic001G314800--Sobic006G014700 Sobic001G314800--Sobic006G265000 Sobic001G088300 Sobic001G088300 Sobic001G314800--Sobic001G088300 Sobic001G314800--Sobic002G407200 Sobic001G314800--Sobic008G018600 Sobic003G296300 Sobic003G296300 Sobic001G314800--Sobic003G296300 Sobic001G314800--Sobic003G310500 Sobic008G181300 Sobic008G181300 Sobic001G314800--Sobic008G181300 Sobic008G075400--Sobic005G218500 Sobic008G075400--Sobic004G220600 Sobic008G075400--Sobic002G216500 Sobic008G075400--Sobic002G160600 Sobic003G376200 Sobic003G376200 Sobic008G075400--Sobic003G376200 Sobic008G075400--Sobic003G378301 Sobic001G320700 Sobic001G320700 Sobic008G075400--Sobic001G320700 Sobic003G248901 Sobic003G248901 Sobic008G075400--Sobic003G248901 Sobic008G075400--Sobic004G140000 Sobic009G038000 Sobic009G038000 Sobic004G140000--Sobic009G038000 Sobic004G140000--Sobic002G216500 Sobic004G140000--Sobic002G160600 Sobic008G038100 Sobic008G038100 Sobic004G140000--Sobic008G038100 Sobic004G140000--Sobic001G314800 Sobic004G140000--Sobic003G310500 Sobic004G140000--Sobic010G214200 Sobic004G140000--Sobic006G265000 Sobic004G101000 Sobic004G101000 Sobic004G140000--Sobic004G101000 Sobic006G265000--Sobic001G314800 Sobic006G265000--Sobic006G014700 Sobic006G265000--Sobic010G214200 Sobic006G265000--Sobic004G101000 Sobic006G265000--Sobic002G160600 Sobic006G265000--Sobic003G310500 Sobic007G196600 Sobic007G196600 Sobic006G265000--Sobic007G196600 Sobic006G265000--Sobic004G140000 Sobic003G262100 Sobic003G262100 Sobic006G265000--Sobic003G262100 Sobic001G044800 Sobic001G044800 Sobic007G183100--Sobic001G044800 Sobic007G183100--Sobic002G160600 Sobic007G183100--Sobic005G218500 Sobic007G183100--Sobic007G064800 Sobic004G143801 Sobic004G143801 Sobic007G183100--Sobic004G143801 Sobic001G494600 Sobic001G494600 Sobic007G183100--Sobic001G494600 Sobic003G184765 Sobic003G184765 Sobic007G183100--Sobic003G184765 Sobic001G432500 Sobic001G432500 Sobic007G183100--Sobic001G432500 Sobic001G319350 Sobic001G319350 Sobic007G183100--Sobic001G319350
Octagon: transcription factors


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