Gene annotation
Transcriptome id Sobic.004G140000.1,Sobic.004G140000.2
Synonym Sb04g017390
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
basic helix-loop-helix family protein, putative, expressed
UniProt C5Y131 , A0A1Z5RN58
Pfam PF00010
Panther DB PTHR11514 PTHR11514 PTHR11514:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57150 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g23550.1 : basic helix-loop-helix family protein, putative, expressed
MaizeGDB (Corn) Zm00025a055097 , Zm00025a011931
Brachypodium KQJ81631
Barley HORVU4Hr1G087590.1 , HORVU4Hr1G087590.3 , HORVU4Hr1G087590.2 , HORVU3Hr1G005500.6 , HORVU3Hr1G005500.5 , HORVU3Hr1G005500.4 , HORVU3Hr1G005500.3 , HORVU3Hr1G005500.2
Wheat TraesCS2D02G270000 , TraesCS2D02G270000 , TraesCS2B02G289700 , TraesCS2B02G289700 , TraesCS3A02G442600 , TraesCS4B02G364800 , TraesCS3A02G028200 , TraesCS3A02G028200 , TraesCS3A02G028200 , TraesCS3D02G017700 , TraesCS3D02G017700 , TraesCS3D02G435200 , TraesCS3B02G018400 , TraesCS5A02G533200 , TraesCS5A02G533200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G038000 expressed protein -
2 Sobic.002G216500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
3 Sobic.002G160600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
4 Sobic.008G038100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
7 Sobic.010G214200 OsFBK17 - F-box domain and kelch repeat containing protein, expressed -
8 Sobic.006G265000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
9 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.006G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
11 Sobic.005G218500 Jacalin-like lectin domain containing protein, putative, expressed -
12 Sobic.003G296300 WRKY13, expressed -
13 Sobic.004G187300 zinc finger protein, putative, expressed -
14 Sobic.001G056500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
15 Sobic.008G188000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
16 Sobic.002G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY76, expressed -
17 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
18 Sobic.001G526900 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
19 Sobic.003G248901 - -
20 Sobic.004G195800 heavy metal associated domain containing protein, expressed -


Gene co-expression network
sample Sobic004G140000 Sobic004G140000 Sobic009G038000 Sobic009G038000 Sobic004G140000--Sobic009G038000 Sobic002G216500 Sobic002G216500 Sobic004G140000--Sobic002G216500 Sobic002G160600 Sobic002G160600 Sobic004G140000--Sobic002G160600 Sobic008G038100 Sobic008G038100 Sobic004G140000--Sobic008G038100 Sobic001G314800 Sobic001G314800 Sobic004G140000--Sobic001G314800 Sobic003G310500 Sobic003G310500 Sobic004G140000--Sobic003G310500 Sobic010G214200 Sobic010G214200 Sobic004G140000--Sobic010G214200 Sobic006G265000 Sobic006G265000 Sobic004G140000--Sobic006G265000 Sobic004G101000 Sobic004G101000 Sobic004G140000--Sobic004G101000 Sobic009G038000--Sobic004G101000 Sobic001G345400 Sobic001G345400 Sobic009G038000--Sobic001G345400 Sobic003G296300 Sobic003G296300 Sobic009G038000--Sobic003G296300 Sobic009G038000--Sobic004G140000 Sobic006G014700 Sobic006G014700 Sobic009G038000--Sobic006G014700 Sobic002G407200 Sobic002G407200 Sobic009G038000--Sobic002G407200 Sobic009G038000--Sobic008G038100 Sobic009G038000--Sobic001G314800 Sobic009G038000--Sobic002G216500 Sobic004G220600 Sobic004G220600 Sobic002G216500--Sobic004G220600 Sobic006G045000 Sobic006G045000 Sobic002G216500--Sobic006G045000 Sobic005G218500 Sobic005G218500 Sobic002G216500--Sobic005G218500 Sobic002G216500--Sobic010G214200 Sobic004G209500 Sobic004G209500 Sobic002G216500--Sobic004G209500 Sobic002G216500--Sobic006G014700 Sobic003G378301 Sobic003G378301 Sobic002G216500--Sobic003G378301 Sobic002G216500--Sobic003G310500 Sobic004G217700 Sobic004G217700 Sobic002G216500--Sobic004G217700 Sobic007G064800 Sobic007G064800 Sobic002G160600--Sobic007G064800 Sobic002G160600--Sobic006G014700 Sobic002G160600--Sobic005G218500 Sobic002G160600--Sobic002G216500 Sobic002G160600--Sobic001G314800 Sobic008G075400 Sobic008G075400 Sobic002G160600--Sobic008G075400 Sobic002G160600--Sobic004G140000 Sobic002G160600--Sobic006G265000 Sobic007G183100 Sobic007G183100 Sobic002G160600--Sobic007G183100 Sobic001G056500 Sobic001G056500 Sobic008G038100--Sobic001G056500 Sobic008G038100--Sobic003G310500 Sobic009G216050 Sobic009G216050 Sobic008G038100--Sobic009G216050 Sobic009G014600 Sobic009G014600 Sobic008G038100--Sobic009G014600 Sobic009G233900 Sobic009G233900 Sobic008G038100--Sobic009G233900 Sobic008G181300 Sobic008G181300 Sobic008G038100--Sobic008G181300 Sobic008G038100--Sobic004G217700 Sobic003G385500 Sobic003G385500 Sobic008G038100--Sobic003G385500 Sobic008G038100--Sobic006G045000 Sobic001G195100 Sobic001G195100 Sobic001G314800--Sobic001G195100 Sobic001G314800--Sobic006G014700 Sobic001G314800--Sobic006G265000 Sobic001G088300 Sobic001G088300 Sobic001G314800--Sobic001G088300 Sobic001G314800--Sobic002G407200 Sobic008G018600 Sobic008G018600 Sobic001G314800--Sobic008G018600 Sobic001G314800--Sobic003G296300 Sobic001G314800--Sobic003G310500 Sobic001G314800--Sobic008G181300 Sobic003G310500--Sobic001G056500 Sobic003G310500--Sobic008G038100 Sobic003G310500--Sobic004G209500 Sobic003G310500--Sobic010G214200 Sobic003G310500--Sobic009G216050 Sobic003G310500--Sobic002G216500 Sobic003G310500--Sobic006G045000 Sobic003G310500--Sobic008G181300 Sobic003G310500--Sobic006G014700 Sobic010G214200--Sobic006G045000 Sobic010G214200--Sobic004G209500 Sobic010G214200--Sobic004G217700 Sobic010G214200--Sobic001G056500 Sobic010G214200--Sobic002G216500 Sobic004G195800 Sobic004G195800 Sobic010G214200--Sobic004G195800 Sobic002G423600 Sobic002G423600 Sobic010G214200--Sobic002G423600 Sobic010G214200--Sobic003G310500 SobicK044407 SobicK044407 Sobic010G214200--SobicK044407 Sobic006G265000--Sobic001G314800 Sobic006G265000--Sobic006G014700 Sobic006G265000--Sobic010G214200 Sobic006G265000--Sobic004G101000 Sobic006G265000--Sobic002G160600 Sobic006G265000--Sobic003G310500 Sobic007G196600 Sobic007G196600 Sobic006G265000--Sobic007G196600 Sobic006G265000--Sobic004G140000 Sobic003G262100 Sobic003G262100 Sobic006G265000--Sobic003G262100 Sobic004G101000--Sobic001G345400 Sobic004G101000--Sobic009G216050 Sobic004G101000--Sobic003G296300 Sobic004G101000--Sobic009G038000 Sobic004G101000--Sobic002G407200 Sobic004G101000--Sobic010G214200 Sobic004G101000--Sobic001G314800 Sobic004G101000--Sobic001G195100 Sobic004G101000--Sobic003G310500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.